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Name: | adrA |
Synonym(s): | yaiC |
Gene(s): | dgcC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Brombacher E., et al., 2003 |
Promoter | |
Name: | adrAp |
+1: | 403687 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 16 |
Sequence: |
tacgaaaatggctcacccgaaatatcatacttctgcctttagctccgtctctataatttgGgaaaattgtttctgaatgtt -35 -10 +1 |
Note(s): | The adrAp promoter has a -10 box perfectly matching the boxes for σ70 promoters, but it does not have a -35 box, which is consistent with the fact that it is a promoter that is activated Brombacher E,2003 . |
Evidence: |
[HIPP] [TIM] |
Reference(s): |
[1] Brombacher E., et al., 2003 [2] Weber H., et al., 2006 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CsgD | activator | adrAp | 403615 | 403629 | -65.5 | ctgatagtgcTAACGGGTGAGCTACgaaaatggct | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1], [3] |
proximal | CsgD2 | activator | adrAp | 403635 | 403645 | -47.0 | gctacgaaaaTGGCTCACCCGaaatatcata | nd | [AIBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1] |
Note(s): | 2The CsgD protein is bound to two sites (-47 and -64) upstream of the adrAp promoter. Together, these sites form an inverted repeat, suggesting that CsgD binds to this region as a dimer. In other regulatory regions, the CsgD protein binds to just one site Brombacher E,2003.2The CsgD protein is bound to two sites (-47 and -64) upstream of the adrAp promoter. Together, these sites form an inverted repeat, suggesting that CsgD binds to this region as a dimer. In other regulatory regions, the CsgD protein binds to just one site Brombacher E,2003. |
Reference(s) |
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