RegulonDB RegulonDB 10.10: Operon Form
   

dgcC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: dgcC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: adrA
Synonym(s): yaiC
Gene(s): dgcC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Brombacher E., et al., 2003
Promoter
Name: adrAp
+1: 403687
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 16
Sequence: tacgaaaatggctcacccgaaatatcatacttctgcctttagctccgtctctataatttgGgaaaattgtttctgaatgtt
                               -35             -10          +1                   
Note(s): The adrAp promoter has a -10 box perfectly matching the boxes for σ70 promoters, but it does not have a -35 box, which is consistent with the fact that it is a promoter that is activated Brombacher E,2003 .
Evidence: [HIPP]
[ICWHO]
[IEP]
[TIM]
Reference(s): [1] Brombacher E., et al., 2003
[2] Huerta AM., et al., 2003
[3] Sommerfeldt N., et al., 2009
[4] Weber H., et al., 2006
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CsgD activator adrAp 403615 403629 -65.5 ctgatagtgcTAACGGGTGAGCTACgaaaatggct nd [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] [1], [5]
proximal CsgD activator adrAp 403635 403645 -47.0 gctacgaaaaTGGCTCACCCGaaatatcata nd [GEA], [AIBSCS], [SM] [1]





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