RegulonDB RegulonDB 10.7: Operon Form
   

tolB-pal-cpoB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: tolB-pal-cpoB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Gene(s): tolB, pal, cpoB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [1] Vianney A., et al., 1996


Transcription unit       
Name: tolB-pal-ybgF
Gene(s): tolB, pal, cpoB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [1] Vianney A., et al., 1996


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [2] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -8.1 777644 777689 acatcaggcaCCGGTTGCCACGGGGTTCTGGTAGTTTTGTGTATTTTAGTTTGTTaacattctgc
  anti-terminator -3.4 777641 777653 tcaacatcagGCACCGGTTGCCacggggttct
  anti-anti-terminator -19.9 777602 777648 gacttcaaacCGTAATCGCGATGTTGACTGTTCGGACGGTCAACATCAGGCACCGGttgccacggg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"
REGULATION, RNA cis-regulatory element:  
Rfam type: Cis-reg
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [3] null null
  Description Rfam score Left Pos Right Pos Sequence (RNA-strand)
  RtT RNA 63.0 780561 780729 agugggucguUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCAAUUGGUCGCAGGUUCGAAUCCUGCACGACCCACCAAUCGCUAAGGUGGAAGCGGUAGUAAAACGUGAAGGAUAACGUUGCAUGAGCAACGGCCCGAAGGGCGAGACGAAGUCGAGUCAUCCUGCACGACCCACCAcuaacauagu
Notes: "The provied "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appears as the reverse complement of the sequence delimited by LeftPos-RightPos"



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