Name: |
pdeR |
Synonym(s): |
gmr |
Gene(s): |
pdeR
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
pdeRp |
+1: |
1346843 |
Sigma Factor: |
Sigma38 Sigmulon |
Distance from start of the gene: |
101
|
Sequence: |
tttttaactgactttcgtttgaaaactggcgtttttccaaaactggattacaaataaataTataaaaaaaacaatgcgttt -35 -10 +1
|
Evidence: |
[HIPP] [ICWHO] [IEP] [TIM]
|
Reference(s): |
[1] Cairrao F., et al., 2001 [2] Huerta AM., et al., 2003 [3] Sommerfeldt N., et al., 2009
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
FliZ
|
repressor |
pdeRp |
1346857
|
1346905
|
-37.5
|
atccaggcagATTTTTTAACTGACTTTCGTTTGAAAACTGGCGTTTTTCCAAAACTGGAttacaaataa |
nd
|
[GEA], [BPP], [SM]
|
[4], [5]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
FliZ |
repressor |
pdeRp |
1346857
|
1346905
|
-37.5
|
atccaggcagATTTTTTAACTGACTTTCGTTTGAAAACTGGCGTTTTTCCAAAACTGGAttacaaataa
|
[GEA]
|
[4], [5]
|
RutR |
repressor |
pdeRp |
nd
|
nd
|
nd
|
nd
|
[GEA]
|
[6]
|