RegulonDB RegulonDB 10.8: Operon Form
   

rapA-rluA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rapA-rluA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rapA-rluA
Gene(s): rluA, rapA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: rapAp
+1: 63358
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 94
Sequence: gagttcgccagataccattttgatgcgtgacgaatgctttgccatccagtaccatagcgcCctttccattcctggacctga
                       -35                        -10       +1                   
Evidence: [AIPP]
[HIPP]
[TIM]
Reference(s): [1] Cabrera JE., et al., 2001
[2] O'Neill MC. 1991


Transcription unit       
Name: hepA
Gene(s): rapA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
Reference(s): [3] Nonaka G., et al., 2006
Promoter
Name: hepAp2
+1: 63588
Sigma Factor: Sigma32, Sigma70
Distance from start of the gene: 324
Sequence: agaaaaccaaaagcgtggtcgccccttgcaatatcagaatcgcggcaccattaagtacgtAtggaccaccaacggcccgga
                          -35                 -10           +1                   
Evidence: [CV(RS-EPT-CBR)]
[CV(TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM]
Reference(s): [3] Nonaka G., et al., 2006
[4] Salgado H, et al., 2012
[5] Wade JT., et al., 2006


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -7.5 63291 63309 aagcacggtaGCGGGTGGTTATTGCCTGcaattaaaga
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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