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Name: | kbp |
Gene(s): | kbp Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the ygaU gene is increased by CpxR Raivio TL,2013. |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Promoter | |
Name: | kbpp4 |
+1: | 2796814 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 28 |
Sequence: |
attaaacctgtgctcatccccgcggcgttaacgcgccgcgttcctctgctacactttctgAgtgtttccgttaacgaatga -10 +1 |
Evidence: | [ICWHO] |
Reference(s): | [1] Huerta AM., et al., 2003 |
Name: | yqaE | |||||||||
Gene(s): | yqaE Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the yqaE gene is increased by CpxR Raivio TL,2013 | |||||||||
Evidence: | [ICWHO] Inferred computationally without human oversight [LTED] Length of transcript experimentally determined |
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Reference(s): | [2] De Lay N., et al., 2009 | |||||||||
Promoter | ||||||||||
Name: | yqaEp | |||||||||
+1: | 2797085 | |||||||||
Distance from start of the gene: | 57 | |||||||||
Sequence: |
gcagcgtaaatgagagtaaaagcgtaagctgaaactggcaggctccgctaaaattactacGcttaagagataaaatctctt |
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Evidence: | [TIM] | |||||||||
Reference(s): | [2] De Lay N., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CpxR-phosphorylated | activator | yqaEp | 2797126 | 2797141 | -48.0 | gcctcagcagCGTAAATGAGAGTAAAagcgtaagct | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [3], [4], [5] |
Name: | yqaE-kbp | |||||||||
Gene(s): | kbp, yqaE Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [PM] Polar mutation | |||||||||
Reference(s): | [3] Bernal-Cabas M., et al., 2015 | |||||||||
Promoter | ||||||||||
Name: | yqaEp | |||||||||
+1: | 2797085 | |||||||||
Distance from start of the gene: | 57 | |||||||||
Sequence: |
gcagcgtaaatgagagtaaaagcgtaagctgaaactggcaggctccgctaaaattactacGcttaagagataaaatctctt |
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Evidence: | [TIM] | |||||||||
Reference(s): | [2] De Lay N., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CpxR-phosphorylated | activator | yqaEp | 2797126 | 2797141 | -48.0 | gcctcagcagCGTAAATGAGAGTAAAagcgtaagct | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [3], [4], [5] |
Reference(s) |
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