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Name: | kbp |
Gene(s): | kbp Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the ygaU gene is increased by CpxR Raivio TL,2013. |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Promoter | |
Name: | kbpp4 |
+1: | 2796814 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 28 |
Sequence: |
attaaacctgtgctcatccccgcggcgttaacgcgccgcgttcctctgctacactttctgAgtgtttccgttaacgaatga -10 +1 |
Note(s): | Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 7.31. P-value: 1.340e-5 |
Evidence: | [ICWHO] |
Reference(s): | [1] Huerta AM., et al., 2003 |
Name: | yqaE-kbp |
Gene(s): | kbp, yqaE Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [PM] Polar mutation |
Reference(s): | [2] Bernal-Cabas M., et al., 2015 |
Promoter | |
Name: | yqaEp |
+1: | 2797085 |
Distance from start of the gene: | 57 |
Sequence: |
gcagcgtaaatgagagtaaaagcgtaagctgaaactggcaggctccgctaaaattactacGcttaagagataaaatctctt |
Evidence: | [TIM] |
Reference(s): | [3] De Lay N., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CpxR-Phosphorylated1 | activator | yqaEp | 2797126 | 2797141 | -48.0 | gcctcagcagCGTAAATGAGAGTAAAagcgtaagct | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [4], [5] |
Note(s): | 1The regulation of CpxR on the yqaE gene has been demonstrated via lacZ reporter gene expression experiments, quantitative PCR analysis of cDNA, and by the identification of a consensus DNA-binding site of CpxR in the regulatory region of yqaE Raivio TL,20131The regulation of CpxR on the yqaE gene has been demonstrated via lacZ reporter gene expression experiments, quantitative PCR analysis of cDNA, and by the identification of a consensus DNA-binding site of CpxR in the regulatory region of yqaE Raivio TL,2013 |
Name: | yqaE |
Gene(s): | yqaE Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the yqaE gene is increased by CpxR Raivio TL,2013 |
Evidence: | [ICWHO] Inferred computationally without human oversight [LTED] Length of transcript experimentally determined |
Reference(s): | [3] De Lay N., et al., 2009 |
Promoter | |
Name: | yqaEp |
+1: | 2797085 |
Distance from start of the gene: | 57 |
Sequence: |
gcagcgtaaatgagagtaaaagcgtaagctgaaactggcaggctccgctaaaattactacGcttaagagataaaatctctt |
Evidence: | [TIM] |
Reference(s): | [3] De Lay N., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CpxR-Phosphorylated1 | activator | yqaEp | 2797126 | 2797141 | -48.0 | gcctcagcagCGTAAATGAGAGTAAAagcgtaagct | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [4], [5] |
Note(s): | 1The regulation of CpxR on the yqaE gene has been demonstrated via lacZ reporter gene expression experiments, quantitative PCR analysis of cDNA, and by the identification of a consensus DNA-binding site of CpxR in the regulatory region of yqaE Raivio TL,20131The regulation of CpxR on the yqaE gene has been demonstrated via lacZ reporter gene expression experiments, quantitative PCR analysis of cDNA, and by the identification of a consensus DNA-binding site of CpxR in the regulatory region of yqaE Raivio TL,2013 |
Regulation by sRNA | ![]() |
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Small RNA name (Regulator) | Regulation type | Mechanism | Function | Binding Sites | Evidence | Reference | |||
---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Sequence (RNA-strand) | |||||||
cyaR | antisense | post-transcriptional regulation | repressor | 2797013 | 2797032 | ACATATGGGTTTCTGGAGA | [IMP] | [3] |
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'" |
Reference(s) |
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