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Name: | chiP-ybfN |
Synonym(s): | ybfMN |
Gene(s): | chiP, chiQ Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Rasmussen et. al., (2009) identified a ybfM-specific RNA species; however, it may be generated by premature termination in the ybfM-N intergenvic region or by degradation of the full-length transcript Rasmussen AA,2009 Regions protected by GalR and GalS upstream of the chiPp promoter were identified by DNase I footprinting Plumbridge J,2014 A binding site for both regulators was identified, 167.5 bp upstream of the chiPp promoter. In addition, two other weak binding sites for GalS nearer to the chiPp promoter were also identified Plumbridge J,2014 However, mutation in neither galR nor galS had any effect on chiP-lacZ expression Plumbridge J,2014 |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Rasmussen AA., et al., 2009 |
Promoter | |
Name: | chiPp |
+1: | 708236 |
Distance from start of the gene: | 98 |
Sequence: |
cttacattctggttacagaaagagattgataattcgcgtcgcgaaaaatagtctgttcctGtagtcagcgagacttttctc |
Evidence: | [TIM] |
Reference(s): | [1] Rasmussen AA., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cAMP | activator | chiPp | 708158 | 708174 | -70.5 | catcaaaataTGTGCGGTTGCTCATGTtcttacattc | nd | [APIORCISFBSCS] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | NagC | repressor | chiPp | 707980 | 708004 | -244.0 | cggcgtttttTCTGCTTTTCTTCGCGAATTAATTCcgcttcgcaa | nd | [BPP], [GEA] | [2] |
proximal | NagC2 | repressor | chiPp | 708203 | 708225 | -22.0 | gaaagagattGATAATTCGCGTCGCGAAAAATAgtctgttcct | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [3] |
Note(s): | 2This binding site was determined from a computational prediction based on different statistical methods Oberto J.,2010 The function of the binding site was assigned according to the distance from the transcription start, with NagC as the transcriptional repressor.3This binding site was determined from a computational prediction based on different statistical methods Oberto J.,2010 The function of the binding site was assigned according to the distance from the transcription start, with NagC as the transcriptional repressor. |
Gene(s): | chiQ Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Reference(s) |
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