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| Operon |  |
|---|---|
| Name: | yhgH-nfuA |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | gntXY | |||||||||
| Gene(s): | yhgH, nfuA Genome Browser M3D Gene expression COLOMBOS | |||||||||
| Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
| Reference(s): | [1] Porco A., et al., 1998 | |||||||||
| Promoter | ||||||||||
| Name: | gntXp | |||||||||
| +1: | 3544667 | |||||||||
| Sigma Factor: | Sigma70 Sigmulon | |||||||||
| Distance from start of the gene: | 215 | |||||||||
| Sequence: |
ctaaccaaatggctttatcaggtgcctgttgcagcacggcttcggccatatcagcaagtgAcagcgcaccaaatccccggc -35 -10 +1 |
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| Note(s): | A σ32-dependent promoter was suggested to be located upstream of gntX Wade JT,2006, but it is unknown whether this promoter is the same as gntXp. An overlapping of σ factors, σ32/σ70, was observed in some promoters Wade JT,2006. | |||||||||
| Evidence: |
[AIPP] [ICWHO] |
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| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Porco A., et al., 1998 |
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| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| proximal | CRP-cyclic-AMP | activator | gntXp | 3544615 | 3544636 | -41.5 | gcctaaccaaATGGCTTTATCAGGTGCCTGTTgcagcacggc | nd | [AIBSCS] | [3] |
| Name: | nfuA |
| Synonym(s): | gntY |
| Gene(s): | nfuA Genome Browser M3D Gene expression COLOMBOS |
| Reference(s): | [4] Nonaka G., et al., 2006 |
| Promoter | |
| Name: | nfuAp2 |
| +1: | 3545458 |
| Sigma Factor: | Sigma32 Sigmulon |
| Distance from start of the gene: | 166 |
| Sequence: |
cgcaacctgaaaaatgcctttcgtcttgaattgcccgtgcaaggtcgccatatggtgattGtggatgatgtcgttaccacc -35 -10 +1 |
| Evidence: |
[AIBSCS] [AIPP] [ICWHO] [RS-EPT-CBR] [TIM] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [4] Nonaka G., et al., 2006 [5] Salgado H, et al., 2012 |
| Name: | nfuA |
| Synonym(s): | gntY |
| Gene(s): | nfuA Genome Browser M3D Gene expression COLOMBOS |
| Promoter | |
| Name: | nfuAp1 |
| +1: | 3545596 |
| Distance from start of the gene: | 28 |
| Sequence: |
caggtctggtgcctttgtcgaaccttgtagagcctcgatgatgggcgtattataaccaacTaaaatagtcaactattaggc |
| Evidence: | [TIM] |
| Reference(s): | [6] Giel JL., et al., 2006 |
| Reference(s) |
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|---|---|
[AIPP] Automated inference of promoter position