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Name: | gntXY | |||||||||
Gene(s): | yhgH, nfuA Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
Reference(s): | [1] Porco A., et al., 1998 | |||||||||
Promoter | ||||||||||
Name: | gntXp | |||||||||
+1: | 3544667 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 215 | |||||||||
Sequence: |
ctaaccaaatggctttatcaggtgcctgttgcagcacggcttcggccatatcagcaagtgAcagcgcaccaaatccccggc -35 -10 +1 |
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Note(s): | A σ32-dependent promoter was suggested to be located upstream of gntX Wade JT,2006, but it is unknown whether this promoter is the same as gntXp. An overlapping of σ factors, σ32/σ70, was observed in some promoters Wade JT,2006. | |||||||||
Evidence: |
[AIPP] [ICWHO] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Porco A., et al., 1998 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | gntXp | 3544615 | 3544636 | -41.5 | gcctaaccaaATGGCTTTATCAGGTGCCTGTTgcagcacggc | nd | [AIBSCS] | [3] |
Name: | nfuA |
Synonym(s): | gntY |
Gene(s): | nfuA Genome Browser M3D Gene expression COLOMBOS |
Reference(s): | [4] Nonaka G., et al., 2006 |
Promoter | |
Name: | nfuAp2 |
+1: | 3545458 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 166 |
Sequence: |
cgcaacctgaaaaatgcctttcgtcttgaattgcccgtgcaaggtcgccatatggtgattGtggatgatgtcgttaccacc -35 -10 +1 |
Evidence: |
[AIBSCS] [AIPP] [ICWHO] [RS-EPT-CBR] [TIM] |
Reference(s): |
[2] Huerta AM., et al., 2003 [4] Nonaka G., et al., 2006 [5] Salgado H, et al., 2012 |
Name: | nfuA |
Synonym(s): | gntY |
Gene(s): | nfuA Genome Browser M3D Gene expression COLOMBOS |
Promoter | |
Name: | nfuAp1 |
+1: | 3545596 |
Distance from start of the gene: | 28 |
Sequence: |
caggtctggtgcctttgtcgaaccttgtagagcctcgatgatgggcgtattataaccaacTaaaatagtcaactattaggc |
Evidence: | [TIM] |
Reference(s): | [6] Giel JL., et al., 2006 |
Reference(s) |
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