RegulonDB RegulonDB 10.8: Operon Form

glsA-ybaT operon and associated TUs in Escherichia coli K-12 genome

Name: glsA-ybaT
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: glsA-ybaT
Synonym(s): ybaST
Gene(s): glsA, ybaT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
[IHBCE] Inferred by a human based on computational evidence
Reference(s): [1] Tucker DL., et al., 2003
Name: glsAp
+1: 511573
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 68
Sequence: ggattagacatttatctctttgttttcctgtagttaagttgcgggtgctaagttaaatcaGgatgcctgaaaatcggcacc
Evidence: [TIM]
Reference(s): [2] Petersen C., et al., 2000
[3] Seo SW., et al., 2015
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal GadX activator glsAp 511574 511593 11.5 gttaaatcagGATGCCTGAAAATCGGCACCggggtgagga nd , [CV(GEA)], [GEA], [IHBCE], [1], [3], [4]
Allosteric regulation of RNA-polymerase
  Regulator Function Promoter target of RNApol Growth Conditions Note Evidence Reference
  ppGpp activation glsAp   [EME] [5]
Evidence: [EME] Expression microarray evidence
Reference(s): [5] Traxler MF., et al., 2008