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Name: | acnA |
Gene(s): | ymiC, acnA Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The expresion of the acnA gene is induced under oxidative stress, although this induction is not early after the stress is generated Lu C,2003. SoxS is a regulator that participates in controlling several genes involved in the response to oxidative stress. SoxS facilitates the binding of RNA polymerase to some promoters, including the acnA promoter, during low iron availability Fuentes AM,2001 |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Cunningham L., et al., 1997 |
Promoter | |
Name: | acnAp1 |
+1: | 1335424 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 148 |
Sequence: |
aatgttccgtcgttattccagacgactggcaactaacatcgcagcagcaagcctttatagAactgtttgctgaagatgatc -35 -10 +1 |
Evidence: |
[HIPP] [ICWHO] [IHBCE] [IMP] [TIM] |
Reference(s): |
[1] Cunningham L., et al., 1997 [2] Huerta AM., et al., 2003 |
Name: | acnA |
Gene(s): | ymiC, acnA Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The expresion of the acnA gene is induced under oxidative stress, although this induction is not early after the stress is generated Lu C,2003. SoxS is a regulator that participates in controlling several genes involved in the response to oxidative stress. SoxS facilitates the binding of RNA polymerase to some promoters, including the acnA promoter, during low iron availability Fuentes AM,2001 |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Cunningham L., et al., 1997 |
Promoter | |
Name: | ymiCp |
+1: | 1335424 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 148 |
Sequence: |
aatgttccgtcgttattccagacgactggcaactaacatcgcagcagcaagcctttatagAactgtttgctgaagatgatc -35 -10 +1 |
Evidence: |
[HIPP] [ICWHO] [IHBCE] [IMP] [TIM] |
Reference(s): |
[1] Cunningham L., et al., 1997 [2] Huerta AM., et al., 2003 |
Name: | acnA | |||||||||
Gene(s): | acnA Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The expresion of the acnA gene is induced under oxidative stress, although this induction is not early after the stress is generated Lu C,2003. SoxS is a regulator that participates in controlling several genes involved in the response to oxidative stress. SoxS facilitates the binding of RNA polymerase to some promoters, including the acnA promoter, during low iron availability Fuentes AM,2001 The acnA gene is downregulated by long-term (8 to 12 h) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. |
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Evidence: | [LTED] Length of transcript experimentally determined | |||||||||
Reference(s): | [1] Cunningham L., et al., 1997 | |||||||||
Promoter | ||||||||||
Name: | acnAp2 | |||||||||
+1: | 1335781 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 50 | |||||||||
Sequence: |
tcttttatcaatttgggttgttatcaaatcgttacgcgatgtttgtgttatctttaatatTcaccctgaagagaatcaggg -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [IHBCE] [TIM] |
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Reference(s): |
[1] Cunningham L., et al., 1997 [2] Huerta AM., et al., 2003 [3] Mendoza-Vargas A., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | ArcA-phosphorylated | repressor | acnAp2 | 1335740 | 1335754 | -34.0 | aatttgggttGTTATCAAATCGTTAcgcgatgttt | nd | [GEA], [APIORCISFBSCS] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | acnAp2 | 1335730 | 1335751 | -40.5 | ctcttttatcAATTTGGGTTGTTATCAAATCGttacgcgatg | nd | [GEA], [APIORCISFBSCS] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FNR | repressor | acnAp2 | 1335734 | 1335747 | -40.5 | tttatcaattTGGGTTGTTATCAAatcgttacgc | nd | [GEA], [APIORCISFBSCS] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | MarA | activator | acnAp2 | 1335720 | 1335740 | -51.5 | aaggtttctcCTCTTTTATCAATTTGGGTTGttatcaaatc | nd | [GEA], [APIORCISFBSCS], [BPP], [CEEUMA], [IHBCE] | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Rob | activator | acnAp2 | 1335720 | 1335740 | -51.5 | aaggtttctcCTCTTTTATCAATTTGGGTTGttatcaaatc | nd | [GEA], [APIORCISFBSCS], [BPP], [CEEUMA], [IHBCE] | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | SoxS | activator | acnAp2 | 1335720 | 1335740 | -51.5 | aaggtttctcCTCTTTTATCAATTTGGGTTGttatcaaatc | nd | [GEA], [RSE], [APIORCISFBSCS], [BPP], [CEEUMA], [IHBCE] | [4], [5] |
Name: | acnA |
Gene(s): | acnA Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The transcription of the gene acnA is enhanced under high oxygen saturation (300%) in the absence of the superoxide dismutase proteins SodA and SodB Baez A,2013 The acnA gene is downregulated by long-term (8 to 12 h) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | acnAp3 |
+1: | 1335827 |
Distance from start of the gene: | 4 |
Sequence: |
gttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggAgctatgtcgtcaaccctacg |
Evidence: |
[HTTIM] ![]() ![]() |
Reference(s): | [3] Mendoza-Vargas A., et al., 2009 |
Reference(s) |
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