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Name: | nfeF | |||||||||
Synonym(s): | yqjH | |||||||||
Gene(s): | nfeF Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | FUR is a regulator that binds cooperatively, on different faces of the DNA Chen Z,2007. Lavrrar JL, McIntosh MA,2003, in the promoter regions; according to the sequence identified by Wang et al. in 2011 (GATTAACAATCATTATCATTT), it is possible that this regulator interacts with three binding sites in different positions Wang S,2011. A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for nfeF . This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
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Evidence: | [AISGDTU] Automated inference that a single-gene directon is a transcription unit | |||||||||
Reference(s): | [1] Panina EM., et al., 2001 | |||||||||
Promoter | ||||||||||
Name: | yqjHp | |||||||||
+1: | 3216538 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 47 | |||||||||
Sequence: |
tagacatatcagttctacaaatcgcttgcatttatcatgattaacaatcattatcatttgCgagttttatttagatatatc -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [IHBCE] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [3] Wang S., et al., 2011 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Fur-Fe2+ | repressor | yqjHp | 3216538 | 3216556 | -9.0 | tatcatgattAACAATCATTATCATTTGCgagttttatt | nd | [GEA], [AIBSCS], [APIORCISFBSCS] | [3], [4] |
proximal | Fur-Fe2+ | repressor | yqjHp | 3216544 | 3216562 | -15.0 | tgcatttatcATGATTAACAATCATTATCatttgcgagt | nd | [GEA], [AIBSCS], [APIORCISFBSCS] | [3], [4] |
proximal | Fur-Fe2+ | repressor | yqjHp | 3216548 | 3216566 | -19.0 | cgcttgcattTATCATGATTAACAATCATtatcatttgc | nd | [GEA], [AIBSCS], [APIORCISFBSCS] | [3], [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NfeR | repressor | yqjHp | 3216512 | 3216531 | 18.0 | ttgcgagtttTATTTAGATATATCTGATTAccatcacgaa | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [3], [5] |
Reference(s) |
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