RegulonDB RegulonDB 11.1: Operon Form
   

ubiT-yhbS operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ubiT-yhbS
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ubiT-yhbS
Gene(s): yhbS, ubiT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: ubiTp2
+1: 3301301
Distance from start of the gene: 25
Sequence: tcatatggaattgttgatttataccgctatgttatttttctgatatggcaaaataggatgAttgttgaaacagggagtaaa
Evidence: [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP]
[RS-EPT-CBR]
Reference(s): [1] Mendoza-Vargas A., et al., 2009
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CsgD repressor ubiTp2 3301280 3301294 15.5 atgattgttgAAACAGGGAGTAAAActcgtgttgg nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [3]
proximal CsgD repressor ubiTp2 3301307 3301321 -12.5 gttatttttcTGATATGGCAAAATAggatgattgt nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [3]


Transcription unit       
Name: ubiT-yhbS
Gene(s): yhbS, ubiT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: ubiTp1
+1: 3301368
Distance from start of the gene: 92
Sequence: tagttaaccttgctgcgacaatttttgatttaaggcagttaaagttgtattggtggtagcAgcaatttcatatggaattgt
Evidence: [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP]
Reference(s): [1] Mendoza-Vargas A., et al., 2009





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