RegulonDB RegulonDB 10.10: Operon Form
   

plaR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: plaR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: plaR
Synonym(s): yiaJ
Gene(s): plaR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Ibanez E., et al., 2000
Promoter
Name: plaRp
+1: 3742618
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 86
Sequence: aaacttgatttcaaatatatcgatcactttttaacaaggcaatctgattgatgaatttcaAaagacataaaaatcaattgg
                               -35                    -10   +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Ibanez E., et al., 2000
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cyclic-AMP repressor plaRp 3742558 3742579 50.5 tatctgtcgaGATCGTGAACTACGGCACACTTtgcgctacca nd [GEA], [APIORCISFBSCS], [BPP] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal IHF repressor plaRp 3742616 3742628 -4.0 aatctgattgATGAATTTCAAAAgacataaaaa nd [APIORCISFBSCS], [BPP] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PlaR repressor plaRp 3742663 3742683 -55.0 aaatttcaatATGCGAAACTTGATTTCAAATatatcgatca nd [GEA], [BCE] [1]





RegulonDB