RegulonDB RegulonDB 10.9: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [FNR,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[FNR,+] Regulatory phrases      

[FNR,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [FNR,+,-90.5]   feoAp
    [FNR,+,-90.5]   cydDp
    [FNR,+,-82.5]   arcAp1
    [FNR,+,-81.5]   ompWp
    [FNR,+,-72.5]   hcpp
    [FNR,+,-70.5]   iraMp
    [FNR,+,-64.5]   napFp1
    [FNR,+,-61.5]   uppp
    [FNR,+,-61.5]   hlyEp
    [FNR,+,-58.5]   focAp3
    [FNR,+,-55.5]   caiFp
    [FNR,+,-50.5]   pdhRp
    [FNR,+,-50.5]   pdhRp2
    [FNR,+,-49.5]   aerp
    [FNR,+,-45.5]   frdAp
    [FNR,+,-45.5]   dcuBp
    [FNR,+,-45.5]   frdAp2
    [FNR,+,-42.5]   adhEp2
    [FNR,+,-42.5]   fnrSp
    [FNR,+,-42.5]   ydhYp
    [FNR,+,-41.5]   nrfAp
    [FNR,+,-41.5]   ansBp2
    [FNR,+,-41.5]   nirBp
    [FNR,+,-41.5]   yhjAp
    [FNR,+,-41.5]   yfgFp
    [FNR,+,-41.5]   dmsAp1
    [FNR,+,-41.5]   narGp
    [FNR,+,-40.5]   nikAp1
    [FNR,+,-40.5]   focAp1
    [FNR,+,-40.5]   aspAp
    [FNR,+,-40.5]   grcAp1
    [FNR,+,-40.5]   ynfEp
    [FNR,+,-40.5]   ynfEp2
    [FNR,+,-39.5]   moaAp1
    [FNR,+,-90.5] [FNR,+,-41.5]   caiTp
    [FNR,+,-79.5] [FNR,+,-41.5]   narKp1
    [FNR,+,-64.5] [FNR,+,-33.5]   nrdDp
    [FNR,+,-40.5] [FNR,+,-.5]   glpABCp
  [FNR,+,-303.5] [FNR,+,-26.5]   ybdNp
  [FNR,+,-201.5] [FNR,+,-71.5]   ravAp
  [FNR,+,-149.5] [FNR,+,-43.5]   hypBp
  [FNR,+,-131.5] [FNR,+,-91.5]   glpTQp
  [FNR,+,-97.5] [FNR,+,-42.5]   fdnGp
  [FNR,+,-115.5] [FNR,+,-63.5] [FNR,+,-33.5]   dcuCp
  [FNR,+,-114.5] [FNR,+,-61.5] [FNR,+,-57.5]   fumBp
  [FNR,+,-404.5]     ydeJp
  [FNR,+,-197.5]     fixAp
  [FNR,+,-167.5]     cydAp2
  [FNR,+,-156.5]     cadCp
  [FNR,+,-143.5]     fesp
  [FNR,+,-127.5]     malPp
  [FNR,+,-148.5] [FNR,+,-105.5]     tdcAp
  [FNR,+,-112.5] [FNR,+,-96.5]     katGp


[FNR,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [NagC,?,-128.0] [OmpR,+,-178.0] [FNR,+,-90.5] [Fur,-,-17.0] feoAp
  [NarL,+,-126.0] [NarL,+,-80.0] [FNR,+,-90.5] [ArcA,+,-44.0] cydDp
  [FNR,+,-82.5] arcAp1
  [FNR,-,-126.5] [ArcA,-,1.5] [FNR,+,-81.5] [NarL,-,-18.5] [CRP,-,-42.5] ompWp
  [NarP,+,-100.0,-109.0] [NarL,+,-100.0,-109.0] [NsrR,-,6.0] [FNR,+,-72.5] hcpp
  [PhoP,+,-199.5] [ArcA,+,-170.5] [FNR,+,-70.5] [PhoP,+,-68.0] [ArcA,+,-16.5] iraMp
  [ModE,+,-133.5] [NarP,+,-49.0,-40.0] [FNR,+,-64.5] [NarL,-,-40.0,-49.0] napFp1
  [FNR,+,-61.5] uppp
  [Fis,-,-110.0,-192.0] [SlyA,+,-55.5,-44.5] [H-NS,-,-6.0,-56.5] [CRP,+,-61.5] [FNR,+,-61.5] [H-NS,+,-56.5,-6.0] [Fis,-,19.0,-63.0] [SlyA,+,76.5,61.5,90.5,52.5] hlyEp
  [FNR,+,-58.5] [NarL,-,-27.0,-25.0] [NarL,-,69.0,302.0,87.0,52.0,221.0,96.0,285.0,170.0,36.0] focAp3
  [CRP,+,-41.5] [FNR,+,-55.5] caiFp
  [BtsR,-,-203.0,-188.0] [CRP,+,-377.5,-110.5] [Cra,-,-185.5] [PdhR,-,19.0] [CRP,+,-70.5,-82.5,-62.5,-50.5] [FNR,+,-50.5] [FNR,-,-50.5] pdhRp
  [BtsR,-,-188.0,-203.0] [CRP,+,-377.5,-110.5] [Cra,-,-185.5] [PdhR,-,19.0] [CRP,+,-82.5,-62.5,-70.5,-50.5] [FNR,+,-50.5] [FNR,-,-50.5] pdhRp2
  [CRP,+,-49.5] [FNR,+,-49.5] aerp
  [DcuR,+,-104.0] [FNR,+,-45.5] [NarL,-,-12.0,-4.0,14.0,-26.0] frdAp
  [CRP,+,-106.5] [NarL,-,-109.0] [FNR,+,-45.5] [NarL,-,24.0,-45.0,19.0,2.0] [NarL,-,43.0] dcuBp
  [DcuR,+,-104.0] [FNR,+,-45.5] [NarL,-,-12.0,6.0,-26.0,14.0,-4.0] frdAp2
  [FNR,+,-42.5] [NarL,-,-15.0,-24.0] adhEp2
  [FNR,+,-42.5] fnrSp
  [FNR,+,-42.5] [NarP,-,6.0,15.0] [NarL,-,-16.0,15.0,-42.0] ydhYp
  [NsrR,-,-121.0] [IHF,+,-127.0] [NsrR,-,-63.0] [NarP,+,-79.0,-70.0] [NarL,+,-50.0,-70.0,-79.0] [FNR,+,-41.5] [IHF,-,-55.0] [NarL,-,-22.0,-50.0] [Fis,-,-15.0] nrfAp
  [CRP,+,-91.5] [FNR,+,-41.5] ansBp2
  [IHF,+,-115.0] [Fis,-,-97.0,-142.0] [CRP,-,-296.5] [NarP,+,-74.0,-65.0] [NarL,+,-65.0,-74.0] [FNR,+,-41.5] [Cra,-,-15.5] [IHF,-,-88.0] [Fis,-,23.0] [CRP,-,-41.5] nirBp
  [OxyR,+,-64.0,-86.0] [FNR,+,-41.5] yhjAp
  [FNR,+,-41.5] yfgFp
  [FNR,+,-41.5] [NarL,-,-7.0,-27.0,15.0] [Fis,-,-33.0,8.0] [Fis,-,59.0] dmsAp1
  [IHF,+,-125.0] [NarL,+,-195.0,-101.0,-208.0,-185.0] [RstA,+,-276.0] [Fis,-,-103.0] [NarL,+,-79.0,-89.0,-71.0,-57.0] [FNR,+,-41.5] [Fis,-,-66.0] narGp
  [FNR,+,-40.5] [NikR-Ni,-,-12.5] nikAp1
  [IHF,+,-112.5] [ArcA,+,-251.0,-114.0] [NarL,-,-226.0,-270.0,-152.0,-101.0,-235.0,-286.0,-253.0,-348.0,-346.0] [CRP,+,-40.5] [FNR,+,-40.5] [ArcA,+,-6.0] [NarL,-,-20.0,-37.0] focAp1
  [DcuR,+,-161.0] [NarL,-,-112.0] [DcuR,+,-75.0] [CRP,+,-90.5] [FNR,+,-40.5] [NarL,-,-67.0,-76.0] aspAp
  [Fis,+,-117.0,-159.0] [ArcA,+,-99.0] [FNR,-,-93.5] [PdhR,-,17.0] [CRP,+,-40.5] [Fis,+,-10.0] [FNR,+,-40.5] [ArcA,+,-82.0] [FNR,-,-40.5] grcAp1
  [FNR,+,-40.5] [NarL,-,-23.0,-14.0] ynfEp
  [FNR,+,-40.5] [NarL,-,-14.0,-23.0] ynfEp2
  [FNR,+,-39.5] [CueR,-,202.0] moaAp1
  [CaiF,+,-227.5,-151.5,-208.5,-170.5] [ArcA,+,-101.0] [CRP,+,-41.5] [FNR,+,-41.5,-90.5] [ArcA,+,28.0,-91.0] [ArcA,+,50.0] caiTp
  [IHF,+,-130.0] [NarL,+,-194.0,-160.0,-177.0,-98.0,-214.0,-154.0,-103.0] [NarL,+,-67.0,-80.0,-90.0] [FNR,+,-41.5,-79.5] [Fis,-,-43.0] narKp1
  [FNR,+,-64.5,-33.5] [NrdR,-,-22.5,9.5] nrdDp
  [Fis,+,-180.0,-116.0] [CRP,+,-40.5,-90.5,-0.5] [Fis,+,-19.0,-68.0,-61.0] [FNR,+,-40.5,-0.5] [GlpR,-,-50.5,1.5,-90.5,-18.5] [Fis,+,35.0] [GlpR,-,41.5] glpABCp
  [CysB,+,-177.5] [FNR,+,-303.5] [FNR,+,-26.5] [ArcA,+,64.5] ybdNp
  [FNR,+,-201.5] [FNR,+,-71.5] ravAp
  [FNR,+,-149.5] [FNR,+,-43.5] hypBp
  [CRP,+,-131.5] [Fis,+,-113.0,-166.0] [FNR,+,-131.5] [GlpR,-,-172.5,-132.5,-113.5] [CRP,+,-91.5,-41.5] [Fis,+,-16.0,-71.0,-64.0] [FNR,+,-91.5] [GlpR,-,-41.5,-81.5] [Fis,+,49.0] [GlpR,-,333.5,315.5,348.5] [IHF,-,202.0,35.0] glpTQp
  [NarL,+,-109.0,-124.0,-100.0] [FNR,+,-97.5] [NarP,-,-100.0,-109.0] [FNR,-,-97.5] [NarL,+,-77.0] [FNR,+,-42.5] fdnGp
  [FNR,+,-115.5] [ArcA,+,-340.0] [FNR,+,-33.5,-63.5] dcuCp
  [FNR,+,-114.5] [FNR,+,-57.5,-61.5] fumBp
  [FNR,+,-404.5] ydeJp
  [CaiF,+,-136.5,-117.5] [CRP,+,-126.5] [FNR,+,-197.5] [CaiF,+,-60.5,-79.5] [CRP,+,-69.5] fixAp
  [FNR,+,-167.5] [FNR,-,-115.5] [ArcA,+,-77.5] cydAp2
  [FNR,+,-156.5] [MlrA,+,-201.5] cadCp
  [FNR,+,-143.5] [Fur,-,-28.0,-9.0,-21.0,-2.0,-15.0] [H-NS,+,-0.5] fesp
  [MalT,+,-95.5] [FNR,+,-127.5] [MalT,+,-37.5,-60.5,-73.5] malPp
  [IHF,+,-103.0] [TdcR,+,-195.0] [FNR,+,-105.5,-148.5] [TdcA,+,-177.0] [CRP,+,-43.5] tdcAp
  [FNR,+,-96.5,-112.5] [OxyR,+,-66.0,-44.0,2.0] katGp

  

  

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