RegulonDB RegulonDB 10.9: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [Fis,-] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[Fis,-] Regulatory phrases      

[Fis,-] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [Fis,-,-82]   ogtp
    [Fis,-,-61]   acsp1
    [Fis,-,-43]   narKp1
    [Fis,-,-42.5]   gyrAp
    [Fis,-,-26]   dnaAp2
    [Fis,-,-21]   hyaAp2
    [Fis,-,-21]   hyaAp
    [Fis,-,-15]   nrfAp
    [Fis,-,-15]   cbpAp4
    [Fis,-,-4]   pyrDp
    [Fis,-,-2]   pflBp1
    [Fis,-,3]   katEp
    [Fis,-,11]   rnpBp
    [Fis,-,-69] [Fis,-,-27]   ansBp1
    [Fis,-,-55] [Fis,-,-31]   yeaRp
    [Fis,-,-52] [Fis,-,-27]   bglGp
    [Fis,-,-40] [Fis,-,-4]   msrAp
    [Fis,-,-26] [Fis,-,-10]   dpsp2
    [Fis,-,-26] [Fis,-,-10]   dpsp
    [Fis,-,-86] [Fis,-,-31] [Fis,-,26]   osmEp2
    [Fis,-,-86] [Fis,-,-31] [Fis,-,26]   osmEp
    [Fis,-,-82] [Fis,-,-75] [Fis,-,22]   xylFp
    [Fis,-,-52] [Fis,-,-23] [Fis,-,19]   nanAp
    [Fis,-,-30] [Fis,-,-10] [Fis,-,20]   topAp1
    [Fis,-,-11] [Fis,-,8] [Fis,-,29]   guaBp
  [Fis,-,-109] [Fis,-,-62]   gyrBp2
  [Fis,-,-109] [Fis,-,-62]   gyrBp
  [Fis,-,-103] [Fis,-,-66]   narGp
  [Fis,-,-265] [Fis,-,-98] [Fis,-,-59]   acsp2
  [Fis,-,-265] [Fis,-,-98] [Fis,-,-59]   acsp
  [Fis,-,-142] [Fis,-,-97] [Fis,-,23]   nirBp
  [Fis,-,-121] [Fis,-,-101] [Fis,-,-80]   gltXp3
  [Fis,-,-147] [Fis,-,-118] [Fis,-,-94] [Fis,-,-18]   gadAp2
  [Fis,-,-147] [Fis,-,-118] [Fis,-,-94] [Fis,-,-18]   gadAp
  [Fis,-,-171.5] [Fis,-,-73.5] [Fis,-,-29.5]   acnBp
  [Fis,-,-158] [Fis,-,-135] [Fis,-,-113] [Fis,-,-48] [Fis,-,-29]   aldBp
  [Fis,-,-170] [Fis,-,-49] [Fis,-,-31] [Fis,-,-11]   crpp2
  [Fis,-,-164] [Fis,-,-43] [Fis,-,-25] [Fis,-,-5]   crpp3
  [Fis,-,-192] [Fis,-,-110] [Fis,-,-63] [Fis,-,9] [Fis,-,19]   hlyEp
  [Fis,-,-145] [Fis,-,-119] [Fis,-,-80] [Fis,-,-19] [Fis,-,3]   ptsGp1
  [Fis,-,-221] [Fis,-,-143] [Fis,-,-101] [Fis,-,-83] [Fis,-,-42] [Fis,-,26]   dusBp
  [Fis,-,-94] [Fis,-,-68] [Fis,-,-37] [Fis,-,-16] [Fis,-,6]   topAp4
    [Fis,-,-10] [Fis,-,72] osmYp
    [Fis,-,-10] [Fis,-,72] osmYp2
    [Fis,-,-92] [Fis,-,31] [Fis,-,49] [Fis,-,69] crpp1
    [Fis,-,-33] [Fis,-,8] [Fis,-,59] dmsAp1
    [Fis,-,-5] [Fis,-,22] [Fis,-,61] [Fis,-,122] [Fis,-,143] ptsGp2
    [Fis,-,-88] [Fis,-,-83] [Fis,-,-20] [Fis,-,14] [Fis,-,41] [Fis,-,49] cspIp
  [Fis,-,-145] [Fis,-,-122] [Fis,-,-89.5] [Fis,-,141] hupBp3
  [Fis,-,-120] [Fis,-,-90] [Fis,-,-66] [Fis,-,72] glcCp
  [Fis,-,-105] [Fis,-,-59] [Fis,-,-27] [Fis,-,37] gadBp
  [Fis,-,-105] [Fis,-,-59] [Fis,-,-27] [Fis,-,37] gadBp2
  [Fis,-,-208] [Fis,-,-185] [Fis,-,-152.5]   [Fis,-,78] hupBp2
      [Fis,-,51] ndhp
      [Fis,-,104] cbpAp6
      [Fis,-,104] cbpAp
      [Fis,-,120] rplMp
      [Fis,-,137] mtlAp


[Fis,-] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [NarL,+,-83.0,-74.0,-41.0,-50.0] [Fis,-,-82.0] ogtp
  [IHF,-,-21.0] [Fis,-,-61.0] acsp1
  [IHF,+,-130.0] [NarL,+,-214.0,-154.0,-103.0,-160.0,-98.0,-177.0,-194.0] [NarL,+,-80.0,-90.0,-67.0] [FNR,+,-79.5,-41.5] [Fis,-,-43.0] narKp1
  [CspA,+,-108.0] [CspA,+,-88.0,-60.0] [Fis,-,-42.5] gyrAp
  [DnaA,-,-61.0,-51.0,-40.0,-73.0,-57.0] [DnaA,+,-40.0,-61.0,-51.0,-73.0] [Fis,-,-26.0] dnaAp2
  [IscR,-,-39.0,-42.0] [YdeO,+,-61.0] [ArcA,+,-7.5,-67.0] [NarP,-,7.0,-10.0] [NarL,-,-10.0,7.0] [Fis,-,-21.0] hyaAp2
  [IscR,-,-39.0,-42.0] [YdeO,+,-61.0] [ArcA,+,-67.0,-7.5] [NarP,-,-10.0,7.0] [NarL,-,-10.0,7.0] [Fis,-,-21.0] hyaAp
  [NsrR,-,-121.0] [IHF,+,-127.0] [NsrR,-,-63.0] [NarP,+,-70.0,-79.0] [NarL,+,-79.0,-70.0,-50.0] [FNR,+,-41.5] [IHF,-,-55.0] [NarL,-,-22.0,-50.0] [Fis,-,-15.0] nrfAp
  [Fis,-,-15.0] cbpAp4
  [PurR,-,-58.5] [Fis,-,-4.0] pyrDp
  [Fis,-,-2.0] pflBp1
  [Fis,-,3.0] katEp
  [Fis,+,-118.0,-156.0] [Fis,+,-50.0] [Fis,-,11.0] rnpBp
  [Fis,-,-69.0,-27.0] ansBp1
  [NsrR,-,-32.0] [NarP,+,-39.0,-48.0] [NarL,+,-48.0,-39.0] [Fis,-,-55.0,-31.0] yeaRp
  [LeuO,+,-149.0,-118.0] [RcsB-BglJ,+,-95.5] [CRP,+,-61.5] [Fis,-,-52.0,-27.0] [H-NS,-,680.0] bglGp
  [Fis,-,-40.0,-4.0] msrAp
  [IHF,+,-98.5] [MntR,-,-17.5] [H-NS,-,3.5] [OxyR,+,-66.0,-44.0,-17.0] [Fis,-,-10.0,-26.0] dpsp2
  [IHF,+,-98.5] [MntR,-,-17.5] [H-NS,-,3.5] [OxyR,+,-44.0,-17.0,-66.0] [Fis,-,-10.0,-26.0] dpsp
  [IHF,-,4.5] [Fis,-,26.0,-86.0,-31.0] osmEp2
  [IHF,-,4.5] [Fis,-,-86.0,26.0,-31.0] osmEp
  [CRP,+,-180.5] [XylR,+,-40.5,-61.5] [Fis,-,22.0,-75.0,-82.0] xylFp
  [CRP,+,-60.5] [NanR,-,-11.5,-2.5,6.5] [Fis,-,-23.0,-52.0,19.0] nanAp
  [Fis,+,-230.0,-199.0,-129.0,-256.0,-178.0,-94.0,-157.0] [Fis,+,-62.0] [Fis,-,-30.0,-10.0,20.0] topAp1
  [CRP,+,-117.5] [PurR,-,-24.5] [Fis,-,29.0,8.0,-11.0] [DnaA,-,248.0] guaBp
  [Fis,-,-109.0] [Fis,-,-62.0] gyrBp2
  [Fis,-,-109.0] [Fis,-,-62.0] gyrBp
  [IHF,+,-125.0] [NarL,+,-208.0,-185.0,-101.0,-195.0] [RstA,+,-276.0] [Fis,-,-103.0] [NarL,+,-71.0,-57.0,-79.0,-89.0] [FNR,+,-41.5] [Fis,-,-66.0] narGp
  [CRP,+,-122.5] [IHF,-,-180.0,-225.0,-153.0] [Fis,-,-265.0,-98.0] [CRP,+,-69.5] [Fis,-,-59.0] acsp2
  [CRP,+,-122.5] [IHF,-,-153.0,-225.0,-180.0] [Fis,-,-98.0,-265.0] [CRP,+,-69.5] [Fis,-,-59.0] acsp
  [IHF,+,-115.0] [Fis,-,-142.0,-97.0] [CRP,-,-296.5] [NarP,+,-65.0,-74.0] [NarL,+,-74.0,-65.0] [FNR,+,-41.5] [Cra,-,-15.5] [IHF,-,-88.0] [Fis,-,23.0] [CRP,-,-41.5] nirBp
  [Fis,-,-101.0,-121.0] [Fis,-,-80.0] gltXp3
  [TorR,-,-122.5] [GadW,-,-121.5,-100.5] [GadX,+,-121.5,-100.5] [Fis,-,-94.0,-118.0,-147.0] [GadW,+,-121.5,-100.5] [GadRcs,+,-62.5] [GadW,-,-57.5,-78.0] [RcsB,-,-18.5] [GadX,+,-78.0,-10.5,-57.5,-31.5] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-57.5,-78.0] [FNR,-,11.5] [TorR,-,73.5] gadAp2
  [TorR,-,-122.5] [GadW,-,-121.5,-100.5] [GadX,+,-121.5,-100.5] [Fis,-,-94.0,-118.0,-147.0] [GadW,+,-121.5,-100.5] [GadRcs,+,-62.5] [GadW,-,-78.0,-57.5] [RcsB,-,-18.5] [GadX,+,-31.5,-57.5,-78.0,-10.5] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-57.5,-78.0] [FNR,-,11.5] [TorR,-,73.5] gadAp
  [ArcA,-,-139.0,-119.0,-170.0,-113.0,-143.0] [Fis,-,-171.5] [ArcA,-,-57.0,-48.0] [CRP,+,-37.5] [Fis,-,-73.5,-29.5] acnBp
  [Fis,-,-135.0,-113.0,-158.0] [CRP,+,-60.5] [Fis,-,-29.0,-48.0] aldBp
  [Fis,-,-170.0] [Fis,-,-11.0,-49.0,-31.0] crpp2
  [Fis,-,-164.0] [Fis,-,-5.0,-43.0,-25.0] crpp3
  [Fis,-,-192.0,-110.0] [SlyA,+,-55.5,-44.5] [H-NS,-,-56.5,-6.0] [CRP,+,-61.5] [FNR,+,-61.5] [H-NS,+,-6.0,-56.5] [Fis,-,9.0,-63.0,19.0] [SlyA,+,52.5,61.5,90.5,76.5] hlyEp
  [CRP,+,-94.5] [Fis,-,-119.0,-145.0] [ArcA,-,-48.0,-85.0,2.0] [SoxS,+,-83.5] [CRP,+,-40.5] [Fis,+,3.0,-19.0] [Mlc,-,-6.0] [Fis,-,-19.0,3.0,-80.0] ptsGp1
  [IHF,+,-114.0] [CRP,+,-252.5,-167.5] [Fis,-,-221.0,-143.0,-101.0] [CRP,+,-63.0] [Fis,-,-83.0,26.0,-42.0] [CRP,-,-63.0] dusBp
  [Fis,-,-94.0] [Fis,-,-16.0,-37.0,-68.0] topAp4
  [Lrp,-,-186.0,-149.0] [IHF,-,-96.5] [IHF,-,-5.0] [Fis,-,-10.0] [CRP,-,1.5,-12.5] [Fis,-,72.0] osmYp
  [Lrp,-,-186.0,-149.0] [IHF,-,-96.5] [IHF,-,-5.0] [Fis,-,-10.0] [CRP,-,12.5,1.5,-12.5] [Fis,-,72.0] osmYp2
  [CRP,+,-59.5] [Fis,-,-92.0] [Cra,+,-45.5] [Fis,-,69.0,31.0,49.0] [CRP,-,41.5] crpp1
  [FNR,+,-41.5] [NarL,-,15.0,-7.0,-27.0] [Fis,-,8.0,-33.0] [Fis,-,59.0] dmsAp1
  [Mlc,-,-35.0] [Fis,-,22.0,-5.0] [Fis,-,143.0,122.0,61.0] ptsGp2
  [BasR,+,-137.5] [Fis,-,14.0,-83.0,-20.0,-88.0] [Fis,-,41.0,49.0] cspIp
  [Fis,-,-145.0,-122.0] [CRP,+,-83.5] [Fis,-,-89.5] [Fis,-,141.0] hupBp3
  [Fis,-,-120.0] [CRP,+,-18.5] [Cra,-,-4.5] [Fis,-,-90.0,-66.0] [GlcC,-,47.0] [Fis,-,72.0] glcCp
  [GadW,-,-231.5,-119.5,-210.5,-98.5] [GadX,+,-98.5,-184.0,-268.0,-231.5,-119.5,-210.5] [Fis,-,-105.0] [GadW,+,-119.5,-231.5,-98.5,-210.5] [GadX,+,-17.5,-39.5] [GadE,+,-62.5] [Fis,-,-59.0,-27.0] [CRP,-,-63.5] [RcsB,+,-64.5] [Fis,-,37.0] gadBp
  [GadW,-,-98.5,-210.5,-119.5,-231.5] [GadX,+,-210.5,-98.5,-268.0,-184.0,-231.5,-119.5] [Fis,-,-105.0] [GadW,+,-231.5,-119.5,-210.5,-98.5] [GadX,+,-39.5,-17.5] [GadE,+,-62.5] [Fis,-,-27.0,-59.0] [CRP,-,-63.5] [RcsB,+,-64.5] [Fis,-,37.0] gadBp2
  [Fis,-,-208.0,-185.0,-152.5] [Fis,-,78.0] hupBp2
  [Fis,+,-123.0] [FNR,-,-94.5] [PdhR,-,-35.0] [NsrR,-,6.0] [ArcA,-,-57.0] [Fis,+,-72.0] [IHF,-,26.0,-17.0,-58.0] [FNR,-,-50.5] [ArcA,-,57.0,52.0,68.0,36.0,66.0] [Fis,-,51.0] ndhp
  [Fis,-,104.0] cbpAp6
  [Fis,-,104.0] cbpAp
  [CRP,-,-49.5] [Fis,-,120.0] rplMp
  [CRP,+,-261.5,-219.5,-102.5,-175.5] [CRP,+,-58.5] [Cra,-,-22.5] [Fis,-,137.0] mtlAp

  

  

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