RegulonDB RegulonDB 10.8: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [IHF,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[IHF,+] Regulatory phrases      

[IHF,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [IHF,+,-81]   uspAp1
    [IHF,+,-80]   paaZp
    [IHF,+,-73]   gcdp1
    [IHF,+,-70]   gltAp1
    [IHF,+,-65]   folAp
    [IHF,+,-49.5]   yiaKp
    [IHF,+,-48]   norVp
    [IHF,+,-44]   dcuDp2
    [IHF,+,-42.5]   pspAp
    [IHF,+,-38.5]   pspGp
    [IHF,+,-38.5]   hycAp
    [IHF,+,-31]   ibpBp
    [IHF,+,16.5]   pstSp
    [IHF,+,-89] [IHF,+,-85]   gltBp
    [IHF,+,-62] [IHF,+,-52]   rtcBp
    [IHF,+,-57] [IHF,+,-32]   atoDp
  [IHF,+,-173.5] [IHF,+,-66.5]   csgDp1
  [IHF,+,-169] [IHF,+,-52]   glmYp1
  [IHF,+,-159] [IHF,+,-72]   aceBp
  [IHF,+,-152] [IHF,+,-47]   glnHp2
    [IHF,+,-89] [IHF,+,138] ilvLp2
    [IHF,+,-52] [IHF,+,77] fimAp
    [IHF,+,-18.5] [IHF,+,140] proVp3
  [IHF,+,-576]     fimBp2
  [IHF,+,-326]     rpoHp6
  [IHF,+,-305]     carAp1
  [IHF,+,-145]     sufAp
  [IHF,+,-133]     yjbEp1
  [IHF,+,-130]     narKp1
  [IHF,+,-127.5]     hypAp
  [IHF,+,-127]     nrfAp
  [IHF,+,-125]     narGp
  [IHF,+,-124]     cysJp
  [IHF,+,-117]     hipBp
  [IHF,+,-115]     nirBp
  [IHF,+,-115]     paaAp
  [IHF,+,-114]     dusBp
  [IHF,+,-112.5]     focAp1
  [IHF,+,-108]     ompFp
  [IHF,+,-107]     glcDp
  [IHF,+,-104]     fnrp
  [IHF,+,-103]     tdcAp
  [IHF,+,-99]     csrBp
  [IHF,+,-98.5]     dpsp
  [IHF,+,-227] [IHF,+,-193]     yeiLp
  [IHF,+,-177] [IHF,+,-134]     ssuEp
      [IHF,+,1848] dppAp


[IHF,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [IHF,+,-81.0] [FadR,-,5.0] [FadR,-,97.0] uspAp1
  [CRP,+,-136.5] [IHF,+,-80.0] [PaaX,-,-6.5] paaZp
  [IHF,+,-73.0] [CRP,-,-31.5] gcdp1
  [CRP,+,-107.5] [ArcA,-,-47.0] [IHF,+,-70.0] gltAp1
  [TyrR,+,-106.0,-148.5] [IHF,+,-65.0] folAp
  [CRP,+,-105.5] [IHF,+,-49.5] [YiaJ,-,-1.0] [CRP,?,62.5] yiaKp
  [NorR,+,-132.0,-111.0] [FNR,-,-140.5] [IHF,+,-48.0] [NorR,+,-87.0] [IHF,-,17.0] [NarP,-,-78.0,-69.0] [NarL,-,-69.0,-78.0] norVp
  [IHF,+,-44.0] dcuDp2
  [PspF,+,-99.0,-119.0] [IHF,+,-42.5] pspAp
  [IHF,+,-38.5] [PspF,+,-87.0] pspGp
  [ModE,+,-192.0] [FhlA,+,-98.0] [NsrR,-,-70.0] [IHF,+,-38.5] [FhlA,+,-84.5] hycAp
  [IHF,+,-31.0] ibpBp
  [IHF,+,16.5] [PhoB,+,-54.0,-32.0] pstSp
  [Lrp,+,-246.0,-215.0,-108.0,-152.0] [ArgR,-,-331.5,-352.0] [GadE,+,-284.0] [IHF,+,-89.0,-85.0] [CRP,-,-65.5] [FNR,-,-26.5] gltBp
  [IHF,+,-52.0,-62.0] rtcBp
  [AtoC,+,-119.5,-138.5] [IHF,+,-57.0,-32.0] atoDp
  [RcdA,+,-298.5] [IHF,+,-173.5] [CpxR,-,-178.0,-129.5,-166.0,-100.0,-141.0,-186.0,-95.5,-108.5] [CRP,+,-170.5] [CsgD,+,-166.5,-118.5] [MlrA,+,-129.5] [Cra,+,-563.5,-196.5,-227.5] [BasR,+,-90.5] [IHF,+,-66.5] [CpxR,-,-21.5,-73.5,3.0,-48.0,-43.0,-52.0] [RstA,-,-50.5] [MqsA,-,-83.5] [BtsR,-,-25.0] [CRP,+,-42.5] [CsgD,+,29.5] [OmpR,+,-49.5] [BtsR,-,37.0] [Cra,+,46.5] csgDp1
  [IHF,+,-169.0] [GlrR,+,-188.5,-221.5,-125.5] [IHF,+,-52.0] glmYp1
  [IHF,+,-159.0] [IclR,-,-104.0,-131.0,-122.0,-141.0] [Cra,+,-166.5] [IHF,+,-72.0] [IclR,-,-53.0,-38.0,-26.0] [CRP,-,-30.5] aceBp
  [IHF,+,-152.0] [NtrC,+,-122.0,-109.0] [NtrC,-,-135.0] [IHF,+,-47.0] [NtrC,-,-79.0] glnHp2
  [IHF,+,-89.0] [IHF,+,138.0] [Lrp,-,167.5,232.0,200.0] ilvLp2
  [IHF,+,-52.0] [IHF,+,77.0] [Lrp,+,204.0,173.0,235.0] fimAp
  [IHF,+,-18.5] [H-NS,-,7.0,-33.0,26.0] [IHF,+,140.0] [H-NS,-,100.0,84.0,130.0,45.0,156.0,170.0,72.0] proVp3
  [NanR,+,-736.5,-727.5,-744.5] [IHF,+,-576.0] [NagC,+,-674.0,-462.0] [BasR,+,-41.5] fimBp2
  [IHF,+,-326.0] rpoHp6
  [PurR,-,-128.5] [IHF,+,-305.0] [RutR,+,-184.0] [Fis,+,-156.0,-103.0] [PepA,-,-173.0] [IHF,-,-305.0] [Fis,+,-81.0] [PepA,-,-79.0] carAp1
  [IHF,+,-145.0] [OxyR,+,-232.0,-210.0] [IscR,+,-145.5,-104.5] [NsrR,-,-6.0,-68.0] [Fur,-,-18.0] [IscR,+,-42.5] sufAp
  [IHF,+,-133.0] [RcsAB,+,-209.0] yjbEp1
  [IHF,+,-130.0] [NarL,+,-194.0,-154.0,-214.0,-160.0,-103.0,-177.0,-98.0] [NarL,+,-67.0,-90.0,-80.0] [FNR,+,-41.5,-79.5] [Fis,-,-43.0] narKp1
  [NsrR,-,-96.0] [IHF,+,-127.5] [FhlA,+,-751.5,-720.5] hypAp
  [NsrR,-,-121.0] [IHF,+,-127.0] [NsrR,-,-63.0] [NarP,+,-70.0,-79.0] [NarL,+,-79.0,-50.0,-70.0] [FNR,+,-41.5] [IHF,-,-55.0] [NarL,-,-22.0,-50.0] [Fis,-,-15.0] nrfAp
  [IHF,+,-125.0] [NarL,+,-101.0,-195.0,-208.0,-185.0] [RstA,+,-276.0] [Fis,-,-103.0] [NarL,+,-79.0,-71.0,-57.0,-89.0] [FNR,+,-41.5] [Fis,-,-66.0] narGp
  [IHF,+,-124.0] [CysB,+,-55.0] cysJp
  [IHF,+,-117.0] [HipAB,-,-85.5,-18.5,-57.5,10.5] [HipB,-,-57.5,10.5,-18.5,-85.5] hipBp
  [IHF,+,-115.0] [Fis,-,-97.0,-142.0] [CRP,-,-296.5] [NarP,+,-65.0,-74.0] [NarL,+,-65.0,-74.0] [FNR,+,-41.5] [Cra,-,-15.5] [IHF,-,-88.0] [Fis,-,23.0] [CRP,-,-41.5] nirBp
  [SlyA,+,-177.5] [IHF,+,-115.0] [SlyA,+,-19.5,-74.5] [CRP,+,-58.5] [PaaX,-,30.0] paaAp
  [IHF,+,-114.0] [CRP,+,-167.5,-252.5] [Fis,-,-143.0,-221.0,-101.0] [CRP,+,-63.0] [Fis,-,26.0,-83.0,-42.0] [CRP,-,-63.0] dusBp
  [IHF,+,-112.5] [ArcA,+,-114.0,-251.0] [NarL,-,-253.0,-270.0,-346.0,-226.0,-235.0,-152.0,-348.0,-286.0,-101.0] [CRP,+,-40.5] [FNR,+,-40.5] [ArcA,+,-6.0] [NarL,-,-37.0,-20.0] focAp1
  [OmpR,-,-370.5] [IHF,+,-108.0] [CpxR,-,-373.0,-429.5,-93.0] [CRP,+,-121.5] [IHF,-,-176.0] [OmpR,-,-50.5,-70.5] [CpxR,-,-68.5] [RstA,-,-92.0] [CRP,+,-52.5,-92.5] [OmpR,+,-90.5,-50.5,-70.5] [IHF,-,-62.0] ompFp
  [ArcA,-,-104.0,-111.0] [IHF,+,-107.0] [GlcC,+,-176.0] [PdhR,-,-56.0] glcDp
  [IHF,+,-104.0] [FNR,-,-0.5] fnrp
  [IHF,+,-103.0] [TdcR,+,-195.0] [FNR,+,-148.5,-105.5] [TdcA,+,-177.0] [CRP,+,-43.5] tdcAp
  [IHF,+,-99.0] [UvrY,+,-183.0] csrBp
  [IHF,+,-98.5] [MntR,-,-17.5] [H-NS,-,3.5] [OxyR,+,-66.0,-17.0,-44.0] [Fis,-,-10.0,-26.0] dpsp
  [IHF,+,-227.0,-193.0] [Lrp,+,-120.0] [FNR,-,-28.5] yeiLp
  [IHF,+,-177.0,-134.0] [Cbl,+,-54.5] [CysB,-,-18.0] [IHF,-,33.0] ssuEp
  [FNR,-,-162.5] [IHF,+,1848.0] dppAp

  

  

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