RegulonDB RegulonDB 11.1: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [IHF,-] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[IHF,-] Regulatory phrases      

[IHF,-] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [IHF,-,-92]   flhDp
    [IHF,-,-88]   nirBp
    [IHF,-,-72]   micFp2
    [IHF,-,-72]   micFp1
    [IHF,-,-61]   sodBp
    [IHF,-,-59.5]   rpoEp1b
    [IHF,-,-55]   nrfAp
    [IHF,-,-54]   uspBp
    [IHF,-,-24]   hptp
    [IHF,-,-22]   dmsAp2
    [IHF,-,-21]   acsp1
    [IHF,-,-12]   ubiCp
    [IHF,-,-4]   plaRp
    [IHF,-,4.5]   osmEp
    [IHF,-,4.5]   osmEp2
    [IHF,-,8]   hemFp1
    [IHF,-,17]   norVp
    [IHF,-,20.5]   amiAp
    [IHF,-,-83] [IHF,-,-74] [IHF,-,-66]   nuoAp2
    [IHF,-,-58] [IHF,-,-17] [IHF,-,26]   ndhp
    [IHF,-,-68] [IHF,-,-48] [IHF,-,-24] [IHF,-,-1]   sodAp
  [IHF,-,-176] [IHF,-,-62]   ompFp2
  [IHF,-,-176] [IHF,-,-62]   ompFp
  [IHF,-,-96.5] [IHF,-,-5]   osmYp2
  [IHF,-,-96.5] [IHF,-,-5]   osmYp
  [IHF,-,-102] [IHF,-,-37] [IHF,-,8]   ompRp1
  [IHF,-,-320] [IHF,-,-304] [IHF,-,-207] [IHF,-,-157] [IHF,-,-77] [IHF,-,-2]   ihfBp
  [IHF,-,-320] [IHF,-,-304] [IHF,-,-207] [IHF,-,-157] [IHF,-,-77] [IHF,-,-2]   ihfBp2
    [IHF,-,-17] [IHF,-,210] ilvLp1
    [IHF,-,-47] [IHF,-,-21] [IHF,-,54] ihfAp4
  [IHF,-,-305]     carAp1
  [IHF,-,-182]     ompCp1
  [IHF,-,-144]     nmpCp
  [IHF,-,-125]     ompCp3
  [IHF,-,-202.5] [IHF,-,-186.5]     fliAp1
  [IHF,-,-225] [IHF,-,-180] [IHF,-,-153]     acsp
  [IHF,-,-225] [IHF,-,-180] [IHF,-,-153]     acsp2
      [IHF,-,33] ssuEp
      [IHF,-,35] [IHF,-,202] glpTQp


[IHF,-] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [OmpR,-,-145.5] [LrhA,-,-112.0] [OmpR,-,18.5] [CRP,+,-71.5] [AcrR,-,-31.5] [IHF,-,-92.0] [FliZ,-,12.0] [YjjQ,-,11.0] [RcsAB,-,11.0] [Fur,-,115.0] flhDp
  [IHF,+,-115.0] [Fis,-,-97.0,-142.0] [CRP,-,-296.5] [NarP,+,-74.0,-65.0] [NarL,+,-74.0,-65.0] [FNR,+,-41.5] [Cra,-,-15.5] [IHF,-,-88.0] [Fis,-,23.0] [CRP,-,-41.5] nirBp
  [SoxS,+,-119.5] [OmpR,+,-165.5,-206.5,-186.5] [SoxS,+,-38.5] [Rob,+,-40.0] [Lrp,-,27.5] [IHF,-,-72.0] [MarA,+,-40.0] [AcrR,-,41.0] [Lrp,-,122.0,58.5,87.5] micFp2
  [SoxS,+,-119.5] [OmpR,+,-186.5,-165.5,-206.5] [SoxS,+,-38.5] [Rob,+,-40.0] [Lrp,-,27.5] [IHF,-,-72.0] [MarA,+,-40.0] [AcrR,-,41.0] [Lrp,-,58.5,87.5,122.0] micFp1
  [NsrR,-,-37.0] [IHF,-,-61.0] [CRP,-,64.5] sodBp
  [IHF,-,-59.5] rpoEp1b
  [NsrR,-,-121.0] [IHF,+,-127.0] [NsrR,-,-63.0] [NarP,+,-70.0,-79.0] [NarL,+,-50.0,-79.0,-70.0] [FNR,+,-41.5] [IHF,-,-55.0] [NarL,-,-22.0,-50.0] [Fis,-,-15.0] nrfAp
  [IHF,-,-54.0] uspBp
  [CRP,+,-65.5] [IHF,-,-24.0] hptp
  [IHF,-,-22.0] [ModE,-,-5.0] dmsAp2
  [IHF,-,-21.0] [Fis,-,-61.0] acsp1
  [IHF,-,-12.0] [FNR,-,-0.5] ubiCp
  [PlaR,-,-55.0] [IHF,-,-4.0] [CRP,-,50.5] plaRp
  [IHF,-,4.5] [Fis,-,26.0,-31.0,-86.0] osmEp
  [IHF,-,4.5] [Fis,-,26.0,-31.0,-86.0] osmEp2
  [IHF,-,8.0] hemFp1
  [NorR,+,-111.0,-132.0] [FNR,-,-140.5] [IHF,+,-48.0] [NorR,+,-87.0] [IHF,-,17.0] [NarP,-,-78.0,-69.0] [NarL,-,-78.0,-69.0] norVp
  [IHF,-,20.5] amiAp
  [ArcA,-,-108.0] [NarL,+,-122.0] [IHF,-,-66.0,-74.0,-83.0] [FNR,-,-40.5] nuoAp2
  [Fis,+,-123.0] [FNR,-,-94.5] [PdhR,-,-35.0] [NsrR,-,6.0] [ArcA,-,-57.0] [Fis,+,-72.0] [IHF,-,-58.0,-17.0,26.0] [FNR,-,-50.5] [ArcA,-,36.0,68.0,52.0,66.0,57.0] [Fis,-,51.0] ndhp
  [CRP,+,-99.5] [ArcA,-,-38.0,-21.0,-10.0] [SoxS,+,-44.0] [Rob,+,-40.5] [SoxR,+,9.0] [Fur,-,-33.0,-42.0,-36.0,-30.0] [IHF,-,-24.0,-1.0,-68.0,-48.0] [MarA,+,-40.5] [FNR,-,-37.5] sodAp
  [OmpR,-,-370.5] [IHF,+,-108.0] [CpxR,-,-373.0,-429.5,-93.0] [CRP,+,-121.5] [IHF,-,-176.0] [OmpR,-,-70.5,-50.5] [CpxR,-,-68.5] [RstA,-,-92.0] [CRP,+,-92.5,-52.5] [OmpR,+,-70.5,-50.5,-90.5] [IHF,-,-62.0] ompFp2
  [OmpR,-,-370.5] [IHF,+,-108.0] [CpxR,-,-373.0,-93.0,-429.5] [CRP,+,-121.5] [IHF,-,-176.0] [OmpR,-,-50.5,-70.5] [CpxR,-,-68.5] [RstA,-,-92.0] [CRP,+,-52.5,-92.5] [OmpR,+,-90.5,-50.5,-70.5] [IHF,-,-62.0] ompFp
  [Lrp,-,-149.0,-186.0] [IHF,-,-96.5] [IHF,-,-5.0] [Fis,-,-10.0] [CRP,-,1.5,-12.5] [Fis,-,72.0] osmYp2
  [Lrp,-,-149.0,-186.0] [IHF,-,-96.5] [IHF,-,-5.0] [Fis,-,-10.0] [CRP,-,12.5,1.5,-12.5] [Fis,-,72.0] osmYp
  [IHF,-,-102.0] [IHF,-,-37.0,8.0] [CRP,-,-53.0] ompRp1
  [IHF,-,-207.0,-320.0,-157.0,-304.0] [IHF,-,-77.0,-2.0] ihfBp
  [IHF,-,-304.0,-320.0,-207.0,-157.0] [IHF,-,-77.0,-2.0] ihfBp2
  [IHF,-,-17.0] [IHF,-,210.0] ilvLp1
  [IHF,-,-21.0,-47.0] [IHF,-,54.0] ihfAp4
  [PurR,-,-128.5] [IHF,+,-305.0] [RutR,+,-184.0] [Fis,+,-156.0,-103.0] [PepA,-,-173.0] [IHF,-,-305.0] [Fis,+,-81.0] [PepA,-,-79.0] carAp1
  [Lrp,-,-376.0,-340.5,-280.5,-311.5] [IHF,-,-182.0] [CpxR,+,-134.0,-351.0,-95.0] [OmpR,+,-67.5,-47.5,-88.5] [Lrp,-,-29.5,2.0] [YjjQ,-,-64.0] [Lrp,-,64.5,86.0] ompCp1
  [MprA,-,-161.0] [IHF,-,-144.0] [OmpR,-,-45.5] [CRP,+,-73.5,-31.5] nmpCp
  [Lrp,-,-319.0,-283.5,-254.5,-151.0,-223.5] [IHF,-,-125.0] [Lrp,-,28.0] [Lrp,-,59.0,121.5,143.0] ompCp3
  [NsrR,-,-207.0] [IHF,-,-186.5,-202.5] [CsgD,-,-10.5] [NsrR,-,7.0] [FlhDC,+,-67.0,-38.0] fliAp1
  [CRP,+,-122.5] [IHF,-,-180.0,-225.0,-153.0] [Fis,-,-265.0,-98.0] [CRP,+,-69.5] [Fis,-,-59.0] acsp
  [CRP,+,-122.5] [IHF,-,-180.0,-225.0,-153.0] [Fis,-,-98.0,-265.0] [CRP,+,-69.5] [Fis,-,-59.0] acsp2
  [IHF,+,-177.0,-134.0] [Cbl,+,-54.5] [CysB,-,-18.0] [IHF,-,33.0] ssuEp
  [CRP,+,-131.5] [Fis,+,-166.0,-113.0] [FNR,+,-131.5] [GlpR,-,-113.5,-172.5,-132.5] [CRP,+,-91.5,-41.5] [Fis,+,-16.0,-64.0,-71.0] [FNR,+,-91.5] [GlpR,-,-81.5,-41.5] [Fis,+,49.0] [GlpR,-,315.5,348.5,333.5] [IHF,-,35.0,202.0] glpTQp

  

  

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