RegulonDB RegulonDB 10.8: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [MarA,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[MarA,+] Regulatory phrases      

[MarA,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [MarA,+,-72.5]   acrAp
    [MarA,+,-65]   decRp
    [MarA,+,-62]   ycgZp
    [MarA,+,-61.5]   marRp
    [MarA,+,-60.5]   poxBp
    [MarA,+,-58.5]   fprp
    [MarA,+,-54]   zwfp
    [MarA,+,-52.5]   tolCp4
    [MarA,+,-51.5]   acnAp2
    [MarA,+,-46.5]   fumCp
    [MarA,+,-43.5]   nfsBp
    [MarA,+,-43]   waaYp
    [MarA,+,-42.5]   pqiAp1
    [MarA,+,-42]   xseAp
    [MarA,+,-41.5]   yncEp
    [MarA,+,-41.5]   mlaFp2
    [MarA,+,-41.5]   inaAp
    [MarA,+,-40.5]   tolCp3
    [MarA,+,-40.5]   sodAp
    [MarA,+,-40.5]   ybjCp
    [MarA,+,-40.5]   acrZp
    [MarA,+,-40]   micFp
    [MarA,+,-38.5]   nfop
  [MarA,+,-161]     aldAp


[MarA,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [AcrR,-,-22.5] [EnvR,-,-22.5] [MarA,+,-72.5] [SoxS,+,-72.5] [MprA,-,-16.0] [PhoP,-,32.0] acrAp
  [MarA,+,-65.0] [SoxS,+,-63.0] decRp
  [MarA,+,-62.0] [BluR,-,-29.5] ycgZp
  [AcrR,-,-40.5] [CpxR,+,-29.0] [MarR,-,17.0,-18.0] [MarA,+,-61.5] [SoxS,+,-61.5] [Rob,+,-61.5] [CRP,+,-52.5] [Fis,+,-81.0] [Cra,-,-72.5] marRp
  [MarA,+,-60.5] [SoxS,+,-60.5] poxBp
  [MarA,+,-58.5] [SoxS,+,-56.5] fprp
  [MarA,+,-54.0] [SoxS,+,-51.5] [Rob,+,-54.0] [Cra,-,-35.5] zwfp
  [MarA,+,-52.5] [SoxS,+,-52.5] [Rob,+,-52.5] tolCp4
  [ArcA,-,-34.0] [MarA,+,-51.5] [SoxS,+,-51.5] [Rob,+,-51.5] [CRP,+,-40.5] [FNR,-,-40.5] acnAp2
  [CRP,?,-484.5] [MarA,+,-46.5] [SoxS,+,19.5] [CRP,+,-53.5] fumCp
  [MarA,+,-43.5] [SoxS,+,-43.5] [Rob,+,-43.5] nfsBp
  [MarA,+,-43.0] [SoxS,+,-42.5] waaYp
  [MarA,+,-42.5] [SoxS,+,-40.0] pqiAp1
  [MarA,+,-42.0] [CRP,-,28.5] xseAp
  [MarA,+,-41.5] yncEp
  [MarA,+,-41.5] mlaFp2
  [MarA,+,-41.5] [SoxS,+,-41.5] [Rob,+,-41.5] inaAp
  [MarA,+,-40.5] [SoxS,+,-40.5] [Rob,+,-40.5] tolCp3
  [CRP,+,-99.5] [ArcA,-,-38.0,-10.0,-21.0] [IHF,-,-48.0,-68.0,-24.0,-1.0] [MarA,+,-40.5] [SoxS,+,-44.0] [Rob,+,-40.5] [FNR,-,-37.5] [SoxR,+,9.0] [Fur,-,-30.0,-33.0,-42.0,-36.0] sodAp
  [OxyR,-,-50.0,-72.0] [MarA,+,-40.5] [SoxS,+,-40.5,-56.5] [Rob,+,-40.5] ybjCp
  [MarA,+,-40.5] [SoxS,+,-40.5] [Rob,+,-40.5] acrZp
  [OmpR,+,-186.5,-206.5,-165.5] [SoxS,+,-119.5] [Lrp,-,27.5] [IHF,-,-72.0] [MarA,+,-40.0] [SoxS,+,-38.5] [Rob,+,-40.0] [AcrR,-,41.0] [Lrp,-,87.5,122.0,58.5] micFp
  [MarA,+,-38.5] [SoxS,+,-26.0,-37.0] [Rob,+,-38.5] nfop
  [ArcA,-,-157.0,-137.0] [MarA,+,-161.0] [SoxS,+,-161.0] [Rob,+,-161.0] [ArcA,-,2.0,-5.0,13.0] [DnaA,-,-7.5] [CRP,+,-59.5] [FNR,-,-10.5] aldAp

  

  

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