RegulonDB RegulonDB 11.2: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [OmpR,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[OmpR,+] Regulatory phrases      

[OmpR,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [OmpR,+,-71.5]   omrBp
    [OmpR,+,-70.5]   omrAp
    [OmpR,+,-49.5]   csgDp1
    [OmpR,+,-49.5]   csgDp3
    [OmpR,+,-45.5]   tppBp
    [OmpR,+,-90.5] [OmpR,+,-70.5] [OmpR,+,-50.5]   ompFp
    [OmpR,+,-90.5] [OmpR,+,-70.5] [OmpR,+,-50.5]   ompFp2
    [OmpR,+,-88.5] [OmpR,+,-67.5] [OmpR,+,-47.5]   ompCp1
  [OmpR,+,-178]     feoAp
  [OmpR,+,-206.5] [OmpR,+,-186.5] [OmpR,+,-165.5]     micFp1
  [OmpR,+,-206.5] [OmpR,+,-186.5] [OmpR,+,-165.5]     micFp2


[OmpR,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [OmpR,+,-71.5] omrBp
  [OmpR,+,-70.5] omrAp
  [CsgD,+,-166.5,-118.5] [RcdA,+,-298.5] [IHF,+,-173.5] [MlrA,+,-129.5] [CpxR,-,-95.5,-108.5,-141.0,-100.0,-186.0,-178.0,-166.0,-129.5] [CRP,+,-170.5] [Cra,+,-196.5,-227.5,-563.5] [CsgD,+,9.5,29.5] [BasR,+,-90.5] [OmpR,+,-49.5] [IHF,+,-66.5] [CpxR,-,-21.5,3.0,-73.5,-43.0,-52.0,-48.0] [RstA,-,-50.5] [MqsA,-,-83.5] [BtsR,-,-25.0] [CRP,+,-42.5] [BtsR,-,37.0] [Cra,+,46.5] csgDp1
  [CsgD,+,-166.5,-118.5] [RcdA,+,-298.5] [IHF,+,-173.5] [MlrA,+,-129.5] [CpxR,-,-100.0,-129.5,-141.0,-166.0,-108.5,-95.5,-178.0,-186.0] [CRP,+,-170.5] [Cra,+,-227.5,-563.5,-196.5] [CsgD,+,9.5,29.5] [BasR,+,-90.5] [OmpR,+,-49.5] [IHF,+,-66.5] [CpxR,-,3.0,-52.0,-43.0,-21.5,-48.0,-73.5] [RstA,-,-50.5] [MqsA,-,-83.5] [BtsR,-,-25.0] [CRP,+,-42.5] [BtsR,-,37.0] [Cra,+,46.5] csgDp3
  [GadX,-,-151.0] [OmpR,+,-45.5] tppBp
  [OmpR,-,-370.5] [IHF,+,-108.0] [IHF,-,-176.0] [CpxR,-,-429.5,-373.0,-93.0] [CRP,+,-121.5] [OmpR,+,-90.5,-50.5,-70.5] [OmpR,-,-50.5,-70.5] [IHF,-,-62.0] [CpxR,-,-68.5] [RstA,-,-92.0] [CRP,+,-52.5,-92.5] ompFp
  [OmpR,-,-370.5] [IHF,+,-108.0] [IHF,-,-176.0] [CpxR,-,-373.0,-429.5,-93.0] [CRP,+,-121.5] [OmpR,+,-50.5,-90.5,-70.5] [OmpR,-,-50.5,-70.5] [IHF,-,-62.0] [CpxR,-,-68.5] [RstA,-,-92.0] [CRP,+,-92.5,-52.5] ompFp2
  [Lrp,-,-376.0,-340.5,-311.5,-280.5] [IHF,-,-182.0] [CpxR,+,-351.0,-134.0,-95.0] [OmpR,+,-88.5,-67.5,-47.5] [Lrp,-,2.0,-29.5] [YjjQ,-,-64.0] [Lrp,-,64.5,86.0] ompCp1
  [NagC,?,-128.0] [OmpR,+,-178.0] [FNR,+,-90.5] [Fur,-,-17.0] feoAp
  [OmpR,+,-165.5,-186.5,-206.5] [SoxS,+,-119.5] [Lrp,-,27.5] [IHF,-,-72.0] [MarA,+,-40.0] [SoxS,+,-38.5] [Rob,+,-40.0] [AcrR,-,41.0] [Lrp,-,87.5,122.0,58.5] micFp1
  [OmpR,+,-186.5,-206.5,-165.5] [SoxS,+,-119.5] [Lrp,-,27.5] [IHF,-,-72.0] [MarA,+,-40.0] [SoxS,+,-38.5] [Rob,+,-40.0] [AcrR,-,41.0] [Lrp,-,87.5,58.5,122.0] micFp2

  

  

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