RegulonDB RegulonDB 10.9: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [PhoP,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[PhoP,+] Regulatory phrases      

[PhoP,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [PhoP,+,-85]   gadEp1
    [PhoP,+,-49]   ompTp
    [PhoP,+,-46]   tolCp2
    [PhoP,+,-44]   mgrRp
    [PhoP,+,-44]   rstAp
    [PhoP,+,-43]   cysBp
    [PhoP,+,-35]   mgtSp
    [PhoP,+,-35]   iraMp2
    [PhoP,+,-34]   mgtAp1
    [PhoP,+,-34]   glgBp
    [PhoP,+,-33]   slyBp1
    [PhoP,+,-33]   borDp
    [PhoP,+,-33]   mgrBp
    [PhoP,+,-32]   hdeAp
    [PhoP,+,-32]   hdeAp2
    [PhoP,+,-32]   pagPp
    [PhoP,+,-32]   ybjGp
    [PhoP,+,-31]   hemLp
    [PhoP,+,-31]   nagAp
    [PhoP,+,-28]   gadWp2
    [PhoP,+,-28]   yrbLp
    [PhoP,+,-20]   metBp
    [PhoP,+,-8]   phoPp2
  [PhoP,+,-199.5] [PhoP,+,-68]   iraMp
  [PhoP,+,-479]     purHp
  [PhoP,+,-191.5]     fadLp
  [PhoP,+,-161]     malSp
  [PhoP,+,-137]     hdeDp
  [PhoP,+,-137]     hdeDp2
  [PhoP,+,-106]     rutAp


[PhoP,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [PhoP,+,-85.0] gadEp1
  [PhoP,+,-49.0] ompTp
  [PhoP,+,-46.0] tolCp2
  [PhoP,+,-44.0] mgrRp
  [PhoP,+,-44.0] rstAp
  [CysB,-,-14.0] [PhoP,+,-43.0] cysBp
  [PhoP,+,-35.0] mgtSp
  [PhoP,+,-35.0] iraMp2
  [PhoP,+,-34.0] mgtAp1
  [PhoP,+,-34.0] glgBp
  [PhoP,+,-33.0] slyBp1
  [PhoP,+,-33.0] borDp
  [PhoP,+,-33.0] mgrBp
  [GadX,+,-126.5] [GadE,+,-117.5] [GadX,-,-126.5] [Lrp,-,-159.0,-97.0,-116.0] [H-NS,-,-118.0] [GadW,-,-126.5] [GadW,+,-126.5] [GadX,+,-74.5,-53.5] [GadE,+,9.5] [TorR,+,-27.5,-51.5] [GadX,-,-53.5,-74.5] [Lrp,-,-18.0,-55.0,-64.0] [FliZ,-,8.0] [GadW,-,-53.5,-74.5] [GadW,+,-74.5,-53.5] [MarA,-,-39.0] [PhoP,+,-32.0] hdeAp
  [GadX,+,-126.5] [GadE,+,-117.5] [GadX,-,-126.5] [Lrp,-,-97.0,-116.0,-159.0] [H-NS,-,-118.0] [GadW,-,-126.5] [GadW,+,-126.5] [GadX,+,-53.5,-74.5] [GadE,+,9.5] [TorR,+,-27.5,-51.5] [GadX,-,-53.5,-74.5] [Lrp,-,-18.0,-55.0,-64.0] [FliZ,-,8.0] [GadW,-,-74.5,-53.5] [GadW,+,-74.5,-53.5] [MarA,-,-39.0] [PhoP,+,-32.0] hdeAp2
  [SlyA,+,-109.5] [SlyA,+,-89.0,-10.0] [PhoP,+,-32.0] pagPp
  [PhoP,+,-32.0] ybjGp
  [PdhR,-,-165.0] [PhoP,+,-31.0] hemLp
  [PhoP,+,-31.0] nagAp
  [GadX,-,-96.5] [GadX,-,-68.5,-53.5,-32.5] [GadW,-,-53.5,-32.5] [PhoP,+,-28.0] gadWp2
  [BasR,-,-52.5] [SoxS,+,-26.0] [PhoP,+,-28.0] [SoxR,+,36.0] yrbLp
  [MetJ-S-adenosylmethionine,-,-30.5,-48.5,-40.5,-56.5,-46.5,-38.5] [PhoP,+,-20.0] metBp
  [PhoP,+,-8.0] phoPp2
  [ArcA,+,-170.5] [PhoP,+,-199.5] [ArcA,+,-16.5] [FNR,+,-70.5] [PhoP,+,-68.0] iraMp
  [PhoP,+,-479.0] [PurR,-,-20.5] [RbsR,-,-20.5] purHp
  [OmpR,-,-149.5] [CRP,+,-157.5] [PhoP,+,-191.5] [OmpR,-,-60.5] [ArcA,-,-38.0] [FadR,-,9.0,-17.0] [OmpR,-,69.5,119.5] fadLp
  [CRP,+,-231.5] [PhoP,+,-161.0] [MalT,+,-74.5,-61.5,-37.5] malSp
  [GadX,+,-94.5,-115.5] [PhoP,+,-137.0] [GadE,+,-51.5] hdeDp
  [GadX,+,-115.5,-94.5] [PhoP,+,-137.0] [GadE,+,-51.5] hdeDp2
  [ArcA,+,-97.0] [RutR,-,-102.5] [NtrC,+,-124.0,-145.0] [PhoP,+,-106.0] rutAp

  

  

RegulonDB