RegulonDB RegulonDB 10.8: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [SoxS,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[SoxS,+] Regulatory phrases      

[SoxS,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [SoxS,+,-83.5]   ptsGp1
    [SoxS,+,-72.5]   acrAp
    [SoxS,+,-69]   ribAp1
    [SoxS,+,-63]   decRp
    [SoxS,+,-61.5]   fldAp
    [SoxS,+,-61.5]   uofp
    [SoxS,+,-61.5]   marRp
    [SoxS,+,-60.5]   poxBp
    [SoxS,+,-56.5]   fprp
    [SoxS,+,-52.5]   tolCp4
    [SoxS,+,-51.5]   zwfp
    [SoxS,+,-51.5]   acnAp2
    [SoxS,+,-44]   sodAp
    [SoxS,+,-43.5]   nfsBp
    [SoxS,+,-42.5]   waaYp
    [SoxS,+,-41.5]   inaAp
    [SoxS,+,-40.5]   tolCp3
    [SoxS,+,-40.5]   acrZp
    [SoxS,+,-40]   pqiAp1
    [SoxS,+,-39.5]   pgip
    [SoxS,+,-26]   yrbLp
    [SoxS,+,6]   nepIp
    [SoxS,+,19.5]   fumCp
    [SoxS,+,-56.5] [SoxS,+,-40.5]   ybjCp
    [SoxS,+,-54.5] [SoxS,+,-50.5]   ydbKp
    [SoxS,+,-49] [SoxS,+,-38]   fldBp
    [SoxS,+,-37] [SoxS,+,-26]   nfop
  [SoxS,+,-119.5] [SoxS,+,-38.5]   micFp
  [SoxS,+,-161]     aldAp


[SoxS,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [Fis,-,-119.0,-145.0] [CRP,+,-94.5] [Mlc,-,-6.0] [ArcA,-,-85.0,-48.0,2.0] [SoxS,+,-83.5] [Fis,-,-80.0,3.0,-19.0] [CRP,+,-40.5] [Fis,+,-19.0,3.0] ptsGp1
  [AcrR,-,-22.5] [EnvR,-,-22.5] [MarA,+,-72.5] [SoxS,+,-72.5] [MprA,-,-16.0] [PhoP,-,32.0] acrAp
  [SoxS,+,-69.0] ribAp1
  [MarA,+,-65.0] [SoxS,+,-63.0] decRp
  [SoxS,+,-61.5] fldAp
  [SoxS,+,-61.5] [OxyR,+,-62.0,-40.0] uofp
  [AcrR,-,-40.5] [CpxR,+,-29.0] [MarR,-,17.0,-18.0] [MarA,+,-61.5] [SoxS,+,-61.5] [Rob,+,-61.5] [CRP,+,-52.5] [Fis,+,-81.0] [Cra,-,-72.5] marRp
  [MarA,+,-60.5] [SoxS,+,-60.5] poxBp
  [MarA,+,-58.5] [SoxS,+,-56.5] fprp
  [MarA,+,-52.5] [SoxS,+,-52.5] [Rob,+,-52.5] tolCp4
  [MarA,+,-54.0] [SoxS,+,-51.5] [Rob,+,-54.0] [Cra,-,-35.5] zwfp
  [ArcA,-,-34.0] [MarA,+,-51.5] [SoxS,+,-51.5] [Rob,+,-51.5] [CRP,+,-40.5] [FNR,-,-40.5] acnAp2
  [CRP,+,-99.5] [ArcA,-,-38.0,-10.0,-21.0] [IHF,-,-48.0,-68.0,-24.0,-1.0] [MarA,+,-40.5] [SoxS,+,-44.0] [Rob,+,-40.5] [FNR,-,-37.5] [SoxR,+,9.0] [Fur,-,-30.0,-33.0,-42.0,-36.0] sodAp
  [MarA,+,-43.5] [SoxS,+,-43.5] [Rob,+,-43.5] nfsBp
  [MarA,+,-43.0] [SoxS,+,-42.5] waaYp
  [MarA,+,-41.5] [SoxS,+,-41.5] [Rob,+,-41.5] inaAp
  [MarA,+,-40.5] [SoxS,+,-40.5] [Rob,+,-40.5] tolCp3
  [MarA,+,-40.5] [SoxS,+,-40.5] [Rob,+,-40.5] acrZp
  [MarA,+,-42.5] [SoxS,+,-40.0] pqiAp1
  [SoxS,+,-39.5] pgip
  [BasR,-,-52.5] [SoxS,+,-26.0] [PhoP,+,-28.0] [SoxR,+,36.0] yrbLp
  [SoxS,+,6.0] nepIp
  [CRP,?,-484.5] [MarA,+,-46.5] [SoxS,+,19.5] [CRP,+,-53.5] fumCp
  [OxyR,-,-50.0,-72.0] [MarA,+,-40.5] [SoxS,+,-40.5,-56.5] [Rob,+,-40.5] ybjCp
  [SoxS,+,-54.5,-50.5] ydbKp
  [SoxS,+,-38.0,-49.0] fldBp
  [MarA,+,-38.5] [SoxS,+,-26.0,-37.0] [Rob,+,-38.5] nfop
  [OmpR,+,-186.5,-206.5,-165.5] [SoxS,+,-119.5] [Lrp,-,27.5] [IHF,-,-72.0] [MarA,+,-40.0] [SoxS,+,-38.5] [Rob,+,-40.0] [AcrR,-,41.0] [Lrp,-,87.5,122.0,58.5] micFp
  [ArcA,-,-157.0,-137.0] [MarA,+,-161.0] [SoxS,+,-161.0] [Rob,+,-161.0] [ArcA,-,2.0,-5.0,13.0] [DnaA,-,-7.5] [CRP,+,-59.5] [FNR,-,-10.5] aldAp

  

  

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