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List of promoters with sites of this regulated phrase.
Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.
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Promoters and their regulatory phrases |
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| [YdeO,+] phrase |
| Remote upstream site(s) | Proximal site(s) | Remote downstream site(s) | Promoter name | |
|---|---|---|---|---|
| [YdeO,+,-61] | hyaAp2 | |||
| [YdeO,+,-61] | hyaAp | |||
| [YdeO,+,-55] | yiiSp | |||
| [YdeO,+,-41] | gadEp3 | |||
| [YdeO,+,-40] | slpp | |||
| [YdeO,+,-27.5] | appCp | |||
| [YdeO,+,-27.5] | appCp2 | |||
| [YdeO,+,-13] | gadWp1 |
| [YdeO,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases. |
| Remote upstream site(s) | Proximal site(s) | Remote downstream site(s) | Promoter name | |
|---|---|---|---|---|
| [YdeO,+,-61.0] [IscR,-,-42.0,-39.0] [Fis,-,-21.0] [ArcA,+,-67.0,-7.5] [NarP,-,-10.0,7.0] [NarL,-,-10.0,7.0] | hyaAp2 | |||
| [YdeO,+,-61.0] [IscR,-,-42.0,-39.0] [Fis,-,-21.0] [ArcA,+,-67.0,-7.5] [NarP,-,-10.0,7.0] [NarL,-,7.0,-10.0] | hyaAp | |||
| [YdeO,+,-55.0] | yiiSp | |||
| [YdeO,+,-41.0] [GadX,+,-29.5,-50.5] | gadEp3 | |||
| [YdeO,+,-40.0] [GadX,+,17.0,-60.5,-81.5,-70.5,-3.0] [GadW,-,-60.5,-81.5] | [MarA,-,39.0] | slpp | ||
| [YdeO,+,-27.5] | appCp | |||
| [YdeO,+,-27.5] | appCp2 | |||
| [YdeO,+,-13.0] | gadWp1 |
