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Synonyms: FNR-[4Fe-4S]2+ reduced, FNR-[2Fe-2S]2+ oxidized, FNR |
Summary:
FNR is the primary transcriptional regulator that mediates the transition from aerobic to anaerobic growth through the regulation of hundreds of genes. Generally, this protein activates genes involved in anaerobic metabolism and represses genes involved in aerobic metabolism [8, 99]. FNR also regulates the transcription of many genes with other functions, such as acid resistance, chemotaxis, cell structure, and molecular biosynthesis, among others [8, 99]. The cellular concentration of FNR is similar under both anaerobic and aerobic growth [], but its activity is regulated directly by oxygen. Under anaerobiosis, FNR acquires a [4Fe-4S] cluster that causes a conformational change and dimerization of the protein that causes it to become activated []. Purification of [4Fe-4S]-FNR in an O2-free environment has been described []. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | CRP | ||||||||||||||||||||||||
Sensing class: | Using internal synthesized signals | ||||||||||||||||||||||||
Connectivity class: | Global Regulator | ||||||||||||||||||||||||
Gene name: | fnr | ||||||||||||||||||||||||
Genome position: | 1398774-1399526 | ||||||||||||||||||||||||
Length: | 753 bp / 250 aa | ||||||||||||||||||||||||
Operon name: | fnr | ||||||||||||||||||||||||
TU(s) encoding the TF: |
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Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence (Confirmed, Strong, Weak) | References | |
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FNR | repressor | aceEp | Sigma70, Sigma38 | nd | nd | aceE, aceF | nd | nd | [GEA] | [5], [6] | ||
FNR | activator | ackAp | Sigma32 | nd | nd | ackA | nd | nd | [GEA] | [6] | ||
FNR | repressor | acnAp2 | Sigma70 | -40.5 | -90.5 | acnA |
tttatcaattTGGGTTGTTATCAAatcgttacgc
|
1335734 | 1335747 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [7] | |
FNR | activator | acrEp | Sigma70 | nd | nd | acrE, acrF | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | activator | adhEp2 | Sigma38 | -42.5 | -230.5 | adhE |
ttgcaaaaatTTGATTTGGATCACgtaatcagta
|
1298345 | 1298358 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [9] | |
FNR | activator | aerp | Sigma28 | -49.5 | -93.5 | aer |
atcgcaaattGCGATCTAAATCAAattaatcggt
|
3219163 | 3219176 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | repressor | aldAp | Sigma70 | -10.5 | -52.5 | aldA |
tctctgatgaTTGATGTTAATTAAcaatgtattc
|
1488173 | 1488186 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | ansBp2 | Sigma70 | -41.5 | -64.5 | ansB |
acgttgtaaaTTGTTTAACGTCAAatttcccata
|
3100786 | 3100799 | [BCE], [SM] | [11] | |
FNR | activator | arcAp1 | Sigma70 | -82.5 | -284.5 | arcA |
acaattgaacTTGATATATGTCAAcgaagcgtag
|
4640584 | 4640597 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [12], [13] | |
FNR | repressor | arcAp3 | Sigma70 | -55.5 | -284.5 | arcA |
acaattgaacTTGATATATGTCAAcgaagcgtag
|
4640584 | 4640597 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [12], [13] | |
FNR | activator | aspAp | Sigma70 | -40.5 | -145.5 | aspA, dcuA |
gacacttaaaGTGATCCAGATTACggtagaaatc
|
4368466 | 4368479 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [14], [15] | |
FNR | activator | aspCp | nd | nd | nd | aspC | nd | nd | [GEA] | [13] | ||
FNR | repressor | aspCp | nd | nd | nd | aspC | nd | nd | [GEA] | [13] | ||
FNR | activator | bcsBp | Sigma70 | nd | nd | bcsB, bcsZ | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | activator | cadCp | Sigma70 | -156.5 | -185.5 | cadC |
atgatgaattTTGATGGTAAGGAAtattacttct
|
4362113 | 4362126 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | caiFp | Sigma70 | -55.5 | -137.5 | caiF |
atcgatatttTTGATGACATAAGCaggatttagc
|
34156 | 34169 | [BCE], [CV(GEA)], [GEA] | [16] | |
FNR | activator | caiTp | Sigma70 | -90.5 | -196.5 | caiT, caiA, caiB, caiC, caiD, caiE |
aaactgattaTTAATCAAAATTAAcgaaaaaacg
|
42121 | 42134 | [AIBSCS], [CV(GEA)], [GEA] | [8], [10] | |
FNR | activator | caiTp | Sigma70 | -41.5 | -147.5 | caiT, caiA, caiB, caiC, caiD, caiE |
aaacaaaaatGTGATACCAATCACagaatacagc
|
42072 | 42085 | [AIBSCS], [CV(GEA)], [GEA] | [8], [10] | |
FNR | repressor | citCp2 | nd | 11.5 | -172.5 | citC, citD, citE, citF, citX, citG |
ctaactctatGTGAAATAAATCAAaatttcacgc
|
652022 | 652035 | [AIBSCS] | [17] | |
FNR | repressor | cydAp1 | Sigma70 | -53.5 | -341.5 | cydA, cydB |
tttgtaggaaTTGATATTTATCAAtgtataagtc
|
771110 | 771123 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [18], [19], [20], [21], [22], [23] | |
FNR | repressor | cydAp1 | Sigma70 | -1.5 | -289.5 | cydA, cydB |
aagagataaaTTGTTCTCGATCAAattggctgaa
|
771162 | 771175 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [18], [19], [21], [22], [23], [24] | |
FNR | activator | cydAp2 | Sigma70 | -167.5 | -341.5 | cydA, cydB |
tttgtaggaaTTGATATTTATCAAtgtataagtc
|
771110 | 771123 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [21], [22], [23] | |
FNR | repressor | cydAp2 | Sigma70 | -115.5 | -289.5 | cydA, cydB |
aagagataaaTTGTTCTCGATCAAattggctgaa
|
771162 | 771175 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [21], [22], [23], [24] | |
FNR | repressor | cydAp3 | Sigma70 | -85.5 | -341.5 | cydA, cydB |
tttgtaggaaTTGATATTTATCAAtgtataagtc
|
771110 | 771123 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [21], [22], [23] | |
FNR | repressor | cydAp3 | Sigma70 | -33.5 | -289.5 | cydA, cydB |
aagagataaaTTGTTCTCGATCAAattggctgaa
|
771162 | 771175 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [21], [22], [23], [24] | |
FNR | repressor | cydAp4 | Sigma70 | -96.5 | -341.5 | cydA, cydB |
tttgtaggaaTTGATATTTATCAAtgtataagtc
|
771110 | 771123 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [21], [22], [23] | |
FNR | repressor | cydAp4 | Sigma70 | -44.5 | -289.5 | cydA, cydB |
aagagataaaTTGTTCTCGATCAAattggctgaa
|
771162 | 771175 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [21], [22], [23], [24] | |
FNR | activator | cydDp | Sigma70 | -90.5 | -159.5 | cydD, cydC |
atggcagcacTTGATGCGGAACGCtacctcgatg
|
931115 | 931128 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [25] | |
FNR | repressor | cyoAp | Sigma70 | -192.5 | -235.5 | cyoA, cyoB, cyoC, cyoD, cyoE |
ttgttaaataATTGTTTTATTTCAcattggttat
|
451839 | 451852 | [AIBSCS], [CV(GEA)], [GEA] | [8], [10], [13], [15], [18] | |
FNR | activator | dcuBp | Sigma70 | -45.5 | -65.5 | dcuB, fumB |
ctgaaaacagTTCATACAAAACAGaacgtgactg
|
4348803 | 4348816 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [14], [26] | |
FNR | activator | dcuCp | nd | -115.5 | -230.5 | dcuC |
gctaacaccaTTGCAATTAACAAAtttgcatcaa
|
656192 | 656205 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [27] | |
FNR | activator | dcuCp | nd | -63.5 | -178.5 | dcuC |
acattattatGTGATAATTGCCAAccgctaaata
|
656140 | 656153 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [27] | |
FNR | activator | dcuCp | nd | -33.5 | -148.5 | dcuC |
aatatgcgttTTGTTATCTATGTAtaaaaacagc
|
656110 | 656123 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [27] | |
FNR | activator | dcuSp | Sigma70 | nd | nd | dcuS, dcuR | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | activator | dmsAp1 | Sigma70 | -41.5 | -177.5 | dmsA, dmsB, dmsC |
ttgtctccctTTGATACCGAACAAtaattactcc
|
940775 | 940788 | [BCE], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [28], [29], [30], [31] | |
FNR | repressor | dpiBp | nd | 45.5 | -206.5 | dpiB, dpiA |
gcgtgaaattTTGATTTATTTCACatagagttag
|
652022 | 652035 | [AIBSCS] | [17] | |
FNR | repressor | dppAp | Sigma70 | -162.5 | -327.5 | dppA, dppB, dppC, dppD, dppF |
tcaccaaatgTTGCTAAATATTAAgctgattgtt
|
3708026 | 3708039 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | emrKp | nd | nd | nd | emrK, emrY | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | activator | fdhFp | Sigma54 | nd | nd | fdhF | nd | nd | [GEA] | [8] | ||
FNR | activator | fdnGp | Sigma70 | -97.5 | -126.5 | fdnG, fdnH, fdnI |
tctaccgctaTTGAGGTAGGTCAAtttgcgaagg
|
1547268 | 1547281 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [32] | |
FNR | repressor | fdnGp | Sigma70 | -97.5 | -126.5 | fdnG, fdnH, fdnI |
tctaccgctaTTGAGGTAGGTCAAtttgcgaagg
|
1547268 | 1547281 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [32] | |
FNR | activator | fdnGp | Sigma70 | -42.5 | -71.5 | fdnG, fdnH, fdnI |
gatgttctttTTGATTTCGCGCAAaaagattcag
|
1547323 | 1547336 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [15], [32] | |
FNR | activator | feoAp | Sigma70 | -90.5 | -196.5 | feoA, feoB, feoC |
gctgcgatatAACCTTGAGCCACATCAACATTGagtcagatta
|
3539956 | 3539978 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [33] | |
FNR | activator | fesp | Sigma70 | -143.5 | -193.5 | fes, ybdZ, entF, fepE |
aactgtcgggCATGGTCGTCATCAacacgacgca
|
612537 | 612550 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | fixAp | Sigma70 | -197.5 | -275.5 | fixA, fixB, fixC, fixX |
cgttttttcgTTAATTTTGATTAAtaatcagttt
|
42121 | 42134 | [AIBSCS], [CV(GEA)], [GEA] | [8], [10] | |
FNR | activator | fnrSp | Sigma70 | -42.5 | -42.5 | fnrS |
gccgcaaagtTTGAGCGAAGTCAAtaaactctct
|
1409080 | 1409093 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [34] | |
FNR | repressor | fnrp | Sigma70 | -0.5 | -26.5 | fnr |
gatgttaaaaTTGACAAATATCAAttacggcttg
|
1399546 | 1399559 | [APIORCISFBSCS], [BCE], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [3] | |
FNR | activator | focAp1 | Sigma70 | -40.5 | -67.5 | focA, pflB |
caggcgagatATGATCTATATCAAtttctcatct
|
954527 | 954540 | [APIORCISFBSCS], [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [35], [36], [37], [38], [39], [40], [41] | |
FNR | activator | focAp3 | Sigma70 | -58.5 | -406.5 | focA, pflB |
gcattctgggCAAAATAAAATCAAatagcctacg
|
954866 | 954879 | [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [6], [35], [37], [38], [39], [40], [41] | |
FNR | activator | frdAp | Sigma70, Sigma38 | -45.5 | -139.5 | frdA, frdB, frdC, frdD |
actaaaaaaaTCGATCTCGTCAAAtttcagactt
|
4382451 | 4382464 | [BCE], [CV(GEA)], [GEA] | [6], [26], [31], [42] | |
FNR | repressor | fumAp | Sigma70 | nd | nd | fumA, fumC | nd | nd | [GEA] | [43] | ||
FNR | activator | fumBp | Sigma70 | -114.5 | -136.5 | fumB |
tctgccggggTTGATTGGTGTGAGcgtatcgtgc
|
4347456 | 4347469 | [BCE], [CV(GEA)], [GEA] | [15], [44], [45] | |
FNR | activator | fumBp | Sigma70 | -61.5 | -83.5 | fumB |
ccgcgatgtaCGGGTTCTTATAAAtgcactttgc
|
4347403 | 4347416 | [BCE], [CV(GEA)], [GEA] | [44], [45] | |
FNR | activator | fumBp | Sigma70 | -57.5 | -79.5 | fumB |
gatgtacgggTTCTTATAAATGCActttgcgtgc
|
4347399 | 4347412 | [BCE], [CV(GEA)], [GEA] | [44], [45] | |
FNR | repressor | fumCp | Sigma38 | nd | nd | fumC | nd | nd | [GEA] | [13] | ||
FNR | repressor | gadAp | Sigma38, Sigma70, Sigma38, Sigma70 | 11.5 | -16.5 | gadA, gadX |
ttattgccttCAAATAAATTTAAGgagttcgaaa
|
3667590 | 3667603 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | repressor | gadXp | Sigma38 | -159.5 | -188.5 | gadX, gadW |
aagggattatTTGCTTACTATTAAtttccctgtg
|
3665992 | 3666005 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | garPp | Sigma70 | nd | nd | garP, garL, garR, garK, rnpB | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | gcvTp | Sigma70 | nd | nd | gcvT, gcvH, gcvP | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | activator | gdhAp1 | Sigma70 | nd | nd | gdhA | nd | nd | [GEA] | [13] | ||
FNR | activator | glnDp | nd | nd | nd | glnD | nd | nd | [GEA] | [13] | ||
FNR | repressor | glnDp | nd | nd | nd | glnD | nd | nd | [GEA] | [13] | ||
FNR | activator | glnKp | Sigma54 | nd | nd | glnK, amtB | nd | nd | [GEA] | [13] | ||
FNR | repressor | glnKp | Sigma54 | nd | nd | glnK, amtB | nd | nd | [GEA] | [13] | ||
FNR | activator | glpABCp | Sigma70 | -40.5 | -104.5 | glpA, glpB, glpC |
gttcaaaatgACGCATGAAATCACgtttcacttt
|
2352536 | 2352549 | [AIBSCS], [CV(GEA)], [GEA] | [46], [47], [48], [49] | |
FNR | activator | glpABCp | Sigma70 | -0.5 | -64.5 | glpA, glpB, glpC |
atgagcgaatATGCGCGAAATCAAacaattcatg
|
2352576 | 2352589 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [46], [47], [48], [49] | |
FNR | activator | glpTQp | Sigma70 | -131.5 | -208.5 | glpT, glpQ |
catgaattgtTTGATTTCGCGCATattcgctcat
|
2352576 | 2352589 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [47], [48], [49] | |
FNR | activator | glpTQp | Sigma70 | -91.5 | -168.5 | glpT, glpQ |
aaagtgaaacGTGATTTCATGCGTcattttgaac
|
2352536 | 2352549 | [AIBSCS], [CV(GEA)], [GEA] | [47], [48], [49] | |
FNR | repressor | gltBp | Sigma38, Sigma70 | -26.5 | -242.5 | gltB, gltD, gltF |
agcttgccatTTGACCTGTATCAGctttcccgat
|
3354476 | 3354489 | [AIBSCS], [CV(GEA)], [GEA] | [10], [13] | |
FNR | repressor | gndp | Sigma70 | nd | nd | gnd | nd | nd | [GEA] | [13] | ||
FNR | repressor | grcAp1 | Sigma70 | -93.5 | -167.5 | grcA |
cccgcataagTTGATGTAAAACAAtaaaatccat
|
2716610 | 2716623 | [BPP], [CV(SM)], [GEA], [SM] | [13], [50], [51], [52] | |
FNR | activator | grcAp1 | Sigma70 | -40.5 | -114.5 | grcA |
gtggtttttaTTGATTTAAATCAAagattcaagg
|
2716557 | 2716570 | [BPP], [CV(SM)], [GEA], [SM] | [6], [50], [51], [52] | |
FNR | repressor | grcAp1 | Sigma70 | -40.5 | -114.5 | grcA |
gtggtttttaTTGATTTAAATCAAagattcaagg
|
2716557 | 2716570 | [BPP], [CV(SM)], [GEA], [SM] | [6], [50], [51], [52] | |
FNR | activator | hcpp | nd | -72.5 | -103.5 | hcp, hcr, poxB |
gccgccaaaaTTGCGCTAAATCAAtctcccttaa
|
913911 | 913924 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [53], [54], [55] | |
FNR | repressor | hemAp1 | Sigma70 | -24.5 | -62.5 | hemA, prfA, prmC |
ctctcttttaTTGATCTTACGCATcctgtatgat
|
1263645 | 1263658 | [BPP], [GEA] | [30], [56], [57] | |
FNR | activator | hlyEp | nd | -61.5 | -133.5 | hlyE |
taaacattgtTTGATATTTATCATattaatagaa
|
1230521 | 1230534 | [BPP], [GEA] | [58], [59] | |
FNR | repressor | hmpp | Sigma38 | 5.5 | -33.5 | hmp |
taagatgcatTTGAGATACATCAAttaagatgca
|
2685795 | 2685808 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [60], [61], [62] | |
FNR | repressor | hyfAp | Sigma54 | -105.5 | -135.5 | hyfA, hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB |
aatccattttTTGCTGAACGTTAAtgaccatcat
|
2601059 | 2601072 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [63] | |
FNR | activator | hypBp | nd | -149.5 | -311.5 | hypB, hypC, hypD, hypE, fhlA |
ggcactggaaTTGATCGAACAGCAggccgcaaaa
|
2850683 | 2850696 | [BPP], [GEA] | [64] | |
FNR | activator | hypBp | nd | -43.5 | -205.5 | hypB, hypC, hypD, hypE, fhlA |
gccttttgttTTGATCTGGTTTGCcgcggcagcg
|
2850789 | 2850802 | [BCE], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [64] | |
FNR | activator | iraDp2 | Sigma38, Sigma70 | nd | nd | idlP, iraD | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | iraMp | nd | -70.5 | -157.5 | iraM |
aaatctcattTTGTTTAACATCCAttgagattcc
|
1212154 | 1212167 | [AIBSCS] | [65] | |
FNR | activator | katGp | Sigma70 | -112.5 | -135.5 | katG |
atcaaaaaagCTTAATTAAGATCAatttgatcta
|
4133693 | 4133706 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | katGp | Sigma70 | -96.5 | -119.5 | katG |
taagatcaatTTGATCTACATCTCtttaaccaac
|
4133709 | 4133722 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | lpdAp | Sigma70 | nd | nd | lpd | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8], [13] | ||
FNR | repressor | lpdAp | Sigma70 | nd | nd | lpd | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8], [13] | ||
FNR | activator | malPp | Sigma70 | -127.5 | -164.5 | malP, malQ |
ttgcattgatTTGATGCTAATCCTgtggtttgca
|
3552631 | 3552644 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | moaAp1 | nd | -39.5 | -256.5 | moaA, moaB, moaC, moaD, moaE |
tgcctccctgATGATGTATATCAAagtaaaaccg
|
816781 | 816794 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [66], [67] | |
FNR | repressor | moeAp | Sigma70 | 34.5 | 4.5 | moeA, moeB |
caggagtgttTTCATGGAATTTACcaccggattg
|
866354 | 866367 | [BPP], [GEA] | [68] | |
FNR | repressor | nacp | Sigma54 | nd | nd | nac | nd | nd | [GEA] | [13] | ||
FNR | activator | napFp1 | Sigma70 | -64.5 | -141.5 | napF, napD, napA, napG, napH, napB, napC, ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH |
cgccactcttTTGATCCTGCTACAggttttaccc
|
2303632 | 2303645 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [69], [70] | |
FNR | activator | narGp | Sigma70 | -41.5 | -98.5 | narG, narH, narJ, narI |
cccatcactcTTGATCGTTATCAAttcccacgct
|
1279759 | 1279772 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1], [29], [30], [71] | |
FNR | activator | narKp1 | Sigma70 | -79.5 | -104.5 | narK |
actatgggtaATGATAAATATCAAtgatagataa
|
1277846 | 1277859 | [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [72] | |
FNR | activator | narKp1 | Sigma70 | -41.5 | -66.5 | narK |
atcttatcgtTTGATTTACATCAAattgccttta
|
1277884 | 1277897 | [BCE], [BPP], [CV(SM)], [SM] | [30], [73] | |
FNR | repressor | narXp | Sigma70 | -106.5 | -265.5 | narX, narL |
aatttgatgtAAATCAAACGATAAgataacttta
|
1277877 | 1277890 | [APIORCISFBSCS], [BCE] | [4], [74] | |
FNR | repressor | narXp | Sigma70 | -75.0 | -234.0 | narX, narL |
tatctatcatTGATATTTATCATTacccatagtg
|
1277845 | 1277858 | [APIORCISFBSCS], [BPP] | [4] | |
FNR | repressor | narXp | Sigma70 | 107.5 | -52.5 | narX, narL |
ccattccagaATGTATCGTCACATtcattaaggt
|
1277664 | 1277677 | [APIORCISFBSCS], [BCE] | [4] | |
FNR | repressor | ndhp | Sigma70 | -94.5 | -187.5 | ndh |
actctgttttTTGATCTCACCCGGtaaagtcgcc
|
1165891 | 1165904 | [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [8], [13], [75], [76] | |
FNR | repressor | ndhp | Sigma70 | -50.5 | -143.5 | ndh |
gcaacaaaacTTGATTAACATCAAttttggtatg
|
1165935 | 1165948 | [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [8], [13], [75], [76] | |
FNR | activator | nikAp1 | nd | -40.5 | -79.5 | nikA, nikB, nikC, nikD, nikE, nikR |
tgcccatctaTTGATCCAGAACAGGtaatcagtat
|
3613581 | 3613595 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [77], [78] | |
FNR | activator | nirBp | Sigma70 | -41.5 | -65.5 | nirB, nirD, nirC, cysG |
aaaggtgaatTTGATTTACATCAAtaagcggggt
|
3493939 | 3493952 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1], [31], [79], [80], [81] | |
FNR | repressor | norVp | Sigma54 | -140.5 | -177.5 | norV, norW |
aaactcatctTTGCCTCACTGTCAatttgactat
|
2832292 | 2832305 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [82] | |
FNR | activator | nrdDp | Sigma70 | -64.5 | -242.5 | nrdD, nrdG |
gctttttactTTGAGCTACATCAAaaaaagctca
|
4462896 | 4462909 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [83], [84] | |
FNR | activator | nrdDp | Sigma70 | -33.5 | -211.5 | nrdD, nrdG |
tcaaacatccTTGATGCAAAGCACtatatataga
|
4462865 | 4462878 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [83], [84] | |
FNR | activator | nrfAp | Sigma70 | -41.5 | -134.5 | nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG |
gcacttacaaTTGATTAAAGACAAcattcacagt
|
4287623 | 4287636 | [BCE], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [85], [86] | |
FNR | repressor | nuoAp2 | Sigma70 | -40.5 | -130.5 | nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN |
gaaaggagtaAAAAACCACATCAAttagctgtat
|
2405196 | 2405209 | [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [8], [13], [87] | |
FNR | repressor | ompWp | nd | -126.5 | -155.5 | ompW |
tatttaaaaaTTGATTTAAATCACattaaccagg
|
1313858 | 1313871 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [88], [89] | |
FNR | activator | ompWp | nd | -81.5 | -110.5 | ompW |
aacttctaaaTTAATCCAGATCAAtaaagggtga
|
1313903 | 1313916 | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [10], [89] | |
FNR | repressor | ompXp2 | nd | nd | nd | ompX | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | pdhRp | Sigma70, Sigma38 | -50.5 | -108.5 | pdhR, aceE, aceF, lpd |
gcacagtttcATGATTTCAATCAAaacctgtatg
|
121977 | 121990 | [AIBSCS], [BCE], [CV(GEA)], [GEA] | [5], [8], [10] | |
FNR | repressor | pdhRp | Sigma70, Sigma38 | -50.5 | -108.5 | pdhR, aceE, aceF, lpd |
gcacagtttcATGATTTCAATCAAaacctgtatg
|
121977 | 121990 | [AIBSCS], [BCE], [CV(GEA)], [GEA] | [5], [8], [10] | |
FNR | activator | pepTp | nd | nd | nd | pepT | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | pitAp | nd | nd | nd | pitA | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | pstSp | Sigma70, Sigma38 | nd | nd | pstS, pstC, pstA, pstB, phoU | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | repressor | purMp | Sigma70 | -192.5 | -236.5 | purM, purN |
attcttttcgTTGACTTTAGTCAAaatgataacg
|
2620954 | 2620967 | [AIBSCS], [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [8], [90] | |
FNR | repressor | puuAp | Sigma38 | 29.0 | -32.0 | puuA, ymjE, puuP |
attttacgctTTGATAACGAGCGGaaaacaaacc
|
1360933 | 1360946 | [AIBSCS], [CV(GEA)], [GEA] | [65] | |
FNR | activator | ravAp | Sigma38 | -201.5 | -236.5 | ravA, viaA |
cgggcaatgaTTGCTTATTATCAGtgctcataga
|
3931323 | 3931336 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [91] | |
FNR | activator | ravAp | Sigma38 | -71.5 | -106.5 | ravA, viaA |
tgcggccacaTTAACCTGGCTCAAagaaaaatac
|
3931193 | 3931206 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [91] | |
FNR | repressor | rplMp | Sigma70 | nd | nd | rplM, rpsI | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | repressor | rplTp | nd | nd | nd | rplT, pheM | nd | nd | [GEA] | [8] | ||
FNR | activator | rpsJp | Sigma70 | nd | nd | rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ | nd | nd | [GEA] | [8] | ||
FNR | repressor | rpsPp | Sigma70 | nd | nd | rpsP, rimM, trmD, rplS | nd | nd | [GEA] | [8] | ||
FNR | repressor | sdhCp | Sigma70 | nd | nd | sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX | nd | nd | [GEA] | [13], [92] | ||
FNR | repressor | sodAp | Sigma70 | -37.5 | -88.5 | sodA |
aagtacggcaTTGATAATCATTTTcaatatcatt
|
4100715 | 4100728 | [BCE], [CV(GEA)], [GEA] | [13], [93], [94] | |
FNR | repressor | soxRp | Sigma70 | nd | nd | soxR | nd | nd | [GEA] | [13] | ||
FNR | repressor | soxSp | Sigma70 | nd | nd | soxS | nd | nd | [GEA] | [13] | ||
FNR | activator | ssuEp | Sigma70 | nd | nd | ssuE, ssuA, ssuD, ssuC, ssuB | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | repressor | sucAp | Sigma38 | nd | nd | sucA, sucB, sucC, sucD | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [95], [96] | ||
FNR | activator | tarp | Sigma28 | nd | nd | tar, tap, cheR, cheB, cheY, cheZ | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | tdcAp | nd | -148.5 | -176.5 | tdcA, tdcB, tdcC, tdcD, tdcE, tdcF, tdcG |
gtcattttttTTGACAAAAATCAGggtttatgct
|
3267235 | 3267248 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | tdcAp | nd | -105.5 | -133.5 | tdcA, tdcB, tdcC, tdcD, tdcE, tdcF, tdcG |
actttaacttGTTGATATTTAAAGgtatttaatt
|
3267192 | 3267205 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | repressor | tpxp | Sigma70 | -18.5 | -51.5 | tpx |
tgctgtgttaTTGACAGTTAGCATaaactaggtg
|
1388856 | 1388869 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [97] | |
FNR | repressor | ubiCp | Sigma70 | -0.5 | -63.5 | ubiC, ubiA |
atcacttaatTTGCTTTACATCTCccgtaaacac
|
4252436 | 4252449 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [98] | |
FNR | activator | uppp | Sigma70 | -61.5 | -98.5 | upp, uraA |
tatctcaaacCGTTATCATTTTGActaaagtcaa
|
2620964 | 2620977 | [AIBSCS], [CV(GEA)], [GEA] | [10] | |
FNR | activator | uxaCp | Sigma70 | nd | nd | uxaC, uxaA | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | xdhAp | nd | nd | nd | xdhA, xdhB, xdhC | nd | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [8] | ||
FNR | activator | ybdNp | Sigma70 | -303.5 | -420.5 | ybdN |
tcagcaggggTTGATGATATTCAAatggaaatag
|
636983 | 636996 | [AIBSCS] | [65] | |
FNR | activator | ybdNp | Sigma70 | -26.5 | -143.5 | ybdN |
atgagagtttTTGATATATAACTAcagacagcta
|
636706 | 636719 | [AIBSCS] | [65] | |
FNR | repressor | ychOp | Sigma70 | nd | nd | ychO | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | activator | ydeJp | Sigma70 | -404.5 | -489.5 | ydeJ |
gtcctctcctTTGTGAGAAATCAAattaccgcgt
|
1624277 | 1624290 | [AIBSCS] | [65] | |
FNR | activator | ydhYp | Sigma38 | -42.5 | -207.5 | ydhY, ydhV, ydhW, ydhX, ydhU, ydhT |
gtaattttaaTTGATAACGATCAAtgttaagggc
|
1754678 | 1754691 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [99], [100] | |
FNR | activator | yecRp | nd | nd | nd | yecR | nd | nd | [AIBSCS], [CV(GEA)], [GEA] | [10] | ||
FNR | repressor | yeiLp | Sigma38 | -28.5 | -93.5 | yeiL |
gggccgatgaTTGAATCTTAACAAcagcgtacgt
|
2255255 | 2255268 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [101] | |
FNR | activator | yfgFp | nd | -41.5 | -134.5 | pdeF |
gttattttgtTTGATATATATCAAttggtacttt
|
2629066 | 2629079 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [102] | |
FNR | repressor | ygbAp | nd | nd | nd | ygbA | nd | nd |