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Synonyms: Nac |
Summary:
Nac, "Nitrogen assimilation control," regulates, without a coeffector, genes involved in nitrogen metabolism under nitrogen-limiting conditions [1] The genes regulated by Nac are transcribed by RNA polymerase σ70. These genes are coupled to the nitrogen regulatory (Ntr) system, which is σ54 dependent, through Nac, whose transcription is activated by NtrC [1] Using DNA microarray analyses, it was shown that Nac could affect the expression of 25 genes [2] This transcriptional regulator is negatively autoregulated [1]and is expressed under nitrogen-limiting conditions [7] Nac belongs to the LysR family [1]and features a helix-turn-helix motif located close to the N terminus [] In contrast with most LysR family members, which are transcribed divergently from the gene they regulate, nac is distant on the genome from its regulated genes [1] In Klebsiella pneumoniae, Nac functions as a dimer, and for some sites it can bind as a tetramer; it recognizes long and short sites in the absence of a coeffector [] Review: [11] Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | LysR | ||||||||||||
Connectivity class: | Local Regulator | ||||||||||||
Gene name: | nac | ||||||||||||
Genome position: | 2061016-2061933 | ||||||||||||
Length: | 918 bp / 305 aa | ||||||||||||
Operon name: | nac | ||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | asnC, codA, codB, feaR, gabD, gabP, gabT, gdhA, gltB, gltD, gltF, mioC, mnmG, nac, nupC, patD, serA, ydcS, ydcT, ydcU, ydcV | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
membrane (5)
nitrogen metabolism (4)
Transcription related (3)
activator (3)
nucleotide and nucleoside conversions (3)
Read more >
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Regulated operon(s) | asnC-mioC-mnmG-rsmG, codBA, feaR, gdhA, glaH-lhgD-gabDTP, gltBDF, nac, nupC, serA, ydcSTUV-patD | ||||||
First gene in the operon(s) | asnC, asnC, asnC, codB, feaR, gabD, gdhA, gltB, nac, nupC, serA, ydcS | ||||||
Simple and complex regulons | AdiY,ArgR,CRP,FNR,Fur,GadE,HdfR,IHF,Lrp,Nac ArgP,CRP,FNR,Fur,Nac AsnC,Nac CRP,CytR,Nac CRP,Nac,NsrR,PhoB,QseB Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence (Confirmed, Strong, Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Nac | repressor | asnCp | Sigma70 | -64.0 | -92.0 | asnC, mioC, mnmG |
aaaccgacacACATGCAATAATCATtcaataaaaa
|
3927088 | 3927102 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [3] | |
Nac | repressor | asnCp | Sigma70 | -7.0 | -35.0 | asnC, mioC, mnmG |
taaaaaagaaGGCTAAAATAGAATGaatcatcaat
|
3927031 | 3927045 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [3] | |
Nac | repressor | asnCp | Sigma70 | 16.0 | -13.0 | asnC, mioC, mnmG |
atgaatcatcAATCCGCATAAGAAAatcctatgga
|
3927009 | 3927023 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [3] | |
Nac | activator | codBp | Sigma70 | -58.0 | -96.0 | codB, codA |
gcactcattcATATAAAAAATATATttccccacga
|
354819 | 354833 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [2], [4] | |
Nac | activator | feaRp2 | Sigma70 | -32.5 | -58.5 | feaR |
gtcaggctcaTTAGCTTCGTTTATTgcaacacaaa
|
1447334 | 1447348 | [IHBCE] | [5] | |
Nac | activator | gabDp1 | Sigma70, Sigma38 | -44.0 | -145.0 | gabD, gabT, gabP |
cggcagcgacATCAGCAATTCCTATtggtgcgcat
|
2791121 | 2791135 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [2], [6] | |
Nac | repressor | gdhAp1 | Sigma70 | -81.0 | -144.0 | gdhA |
tcgcatttggTTATGAGATTACTCTcgttattaat
|
1842220 | 1842234 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [7] | |
Nac | repressor | gdhAp1 | Sigma70 | -25.0 | -88.0 | gdhA |
ttcttgcttaCCGTCACATTCTTGAtggtatagtc
|
1842276 | 1842290 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [7] | |
Nac | repressor | gdhAp1 | Sigma70 | 25.0 | -39.0 | gdhA |
cacatgacatAAACAACATAAGCACaatcgtatta
|
1842325 | 1842339 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [7] | |
Nac | repressor | gdhAp1 | Sigma70 | 45.0 | -19.0 | gdhA |
agcacaatcgTATTAATATATAAGGgttttatatc
|
1842345 | 1842359 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [7] | |
Nac | repressor | gltBp | Sigma38, Sigma70 | nd | nd | gltB, gltD, gltF | nd | nd | [GEA] | [2] | ||
Nac | repressor | nacp | Sigma54 | -75.0 | -120.0 | nac |
tgacgaatctATCATAATCTCTTATttgacagttg
|
2062046 | 2062060 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] | |
Nac | activator | nupCp | Sigma70 | nd | nd | nupC | nd | nd | [GEA] | [2] | ||
Nac | repressor | serAp1 | Sigma70 | -30.0 | -76.0 | serA |
gcaaacgttcATATTGCCGCAATATtattttttga
|
3058479 | 3058493 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [8] | |
Nac | repressor | serAp1 | Sigma70 | -19.0 | -65.0 | serA |
tattgccgcaATATTATTTTTTGATatgttgaaag
|
3058468 | 3058482 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [8] | |
Nac | activator | ydcSp1 | Sigma38 | -51.0 | -106.0 | ydcS, ydcT, ydcU, ydcV, patD |
cacaacctgaATAAATTTTCTCAGGggcgaaggtg
|
1511541 | 1511555 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [GEA], [IDA] | [9] |
Functional conformation | Function | Object name | Object type | Distance to first Gene | Sequence | LeftPos | RightPos | Center Position | Growth Condition | Evidence (Confirmed, Strong, Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Nac | activator | nd | tu | nd |
tatcgaaaccCATAGCAAATAATGATTcaacaacgca
|
2385814 | 2385831 | 2385822.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
tgatgacacgCATACTCTCTCCTTATAaccaattgtt
|
997510 | 997527 | 997518.0 | nd | , , | [10] | |
Nac | activator | ivy | tu | nd |
agaataaattGATAACAAATGCTGATAttggaaatat
|
240267 | 240284 | 240275.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
tcttgttaatTATAAGGATATTTTATGcgctataatg
|
4283073 | 4283090 | 4283081.0 | nd | , , | [10] | |
Nac | activator | ackA | tu | nd |
cagccaatggCATAATGTATATGAATTtgacgactca
|
2413286 | 2413303 | 2413294.0 | nd | , , | [10] | |
Nac | activator | yqeK | tu | nd |
tcttcagaaaTATCCGCTATCTTTATTgacaaatcat
|
2990733 | 2990750 | 2990741.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
tccataaatgCAAAAGTATTTTGTATGcgtggtttta
|
820717 | 820734 | 820725.0 | nd | , , | [10] | |
Nac | activator | ybiN | tu | nd |
atttttacaaAATAAGACAAATCAATGacatgcataa
|
842176 | 842193 | 842184.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
ttagccaaaaAATAAGAAAAGATTATGcaagcaacag
|
3674772 | 3674789 | 3674780.0 | nd | , , | [10] | |
Nac | activator | yagU | tu | nd |
ctaatataaaAATAGGGAGAAATGATGgagcttatat
|
302848 | 302865 | 302856.0 | nd | , , | [10] | |
Nac | activator | ygjH | tu | nd |
gtacgcgtcgTATAAAAAGATCGGATGgcgacgtcgt
|
3220903 | 3220920 | 3220911.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
atattcattaATAAAAGCCATACTTATagcacaaagg
|
569295 | 569312 | 569303.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
ttacccgaatCATAAGATTCTGATATCttaaataaga
|
3584539 | 3584556 | 3584547.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
aaaacgccaaCATAAGAGAAACCTATGccattacccg
|
607381 | 607398 | 607389.0 | nd | , , | [10] | |
Nac | activator | yjaH | tu | nd |
ataaacacatTGTAAGGATAACTTATGaacaagactc
|
4200267 | 4200284 | 4200275.0 | nd | , , | [10] | |
Nac | activator | yaiS | tu | nd |
aatatcaataCATATAATAAAACTATTatattcgcat
|
384977 | 384994 | 384985.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
aaactcaacgCTATAAGGCGTTGTTCTggttatcgtt
|
3609243 | 3609260 | 3609251.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
ttaattacagCATAACGATTAATGATAcacgtacagg
|
3113132 | 3113149 | 3113140.0 | nd | , , | [10] | |
Nac | activator | rfaH | tu | nd |
tcgctccatgCTATTGCTTAATCTTATtaataaagag
|
4024385 | 4024402 | 4024393.0 | nd | , , | [10] | |
Nac | activator | ybeQ | tu | nd |
aaatggaacaCATAAAAATATAATATGttttatctgc
|
676576 | 676593 | 676584.0 | nd | , , | [10] | |
Nac | activator | rlmM | tu | nd |
gcgggttatgTCATTTATGAATGTTATcaacctgatg
|
2941103 | 2941120 | 2941111.0 | nd | , , | [10] | |
Nac | activator | ydeE | tu | nd |
ggttttattgCCATTACTTTAGTGAATaacgtgacgc
|
1621597 | 1621614 | 1621605.0 | nd | , , | [10] | |
Nac | activator | dcp | tu | nd |
ctccgttatcAGTAAGCCTACGCTATGgaacacctcg
|
1627407 | 1627424 | 1627415.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
ttactcacgaTGATACGGTTTTGTTATtaagaggaac
|
1212942 | 1212959 | 1212950.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
aaagggagaaTAAACGTCTTACTTATAgaacagtgaa
|
4436611 | 4436628 | 4436619.0 | nd | , , | [10] | |
Nac | activator | ybhD | tu | nd |
ttaccgctggCAATCGGTAAATTTAATgagctgtatc
|
800228 | 800245 | 800236.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
gcgaaattccCATAACTAATTAGGATTattacaaaaa
|
1256267 | 1256284 | 1256275.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
gcttaccactTATAAAGATTAATTATAaatatataat
|
2249633 | 2249650 | 2249641.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
tctgacacaaGATAAGCAAAAGTGATTtatgtgatta
|
3354195 | 3354212 | 3354203.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
aggcgacctgCCAAAAGCCAAAGTTATccacgggcga
|
2476418 | 2476435 | 2476426.0 | nd | , , | [10] | |
Nac | activator | ycaK | tu | nd |
tgctaaaaggATATATTGACAGAGTATggaataatgg
|
949967 | 949984 | 949975.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
ttttggcagtAATAATAAAATATGATGtttccttgcc
|
3321211 | 3321228 | 3321219.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
tgccggtgacGATCGTTATTTTTAATAatggcggcat
|
2490531 | 2490548 | 2490539.0 | nd | , , | [10] | |
Nac | activator | yjgM | tu | nd |
tgtctgtataTATAAGTTATATCAATGgattttttaa
|
4479689 | 4479706 | 4479697.0 | nd | , , | [10] | |
Nac | activator | uspC | tu | nd |
gtgattgattAATTATCTTTACTAATAatcagactaa
|
1979632 | 1979649 | 1979640.0 | nd | , , | [10] | |
Nac | activator | ycaN | tu | nd |
cccattattcCATACTCTGTCAATATAtccttttagc
|
949968 | 949985 | 949976.0 | nd | , , | [10] | |
Nac | activator | bisC | tu | nd |
caacataaacGCATTCGTGAGGCTTATggtccggcat
|
3716080 | 3716097 | 3716088.0 | nd | , , | [10] | |
Nac | activator | wecH | tu | nd |
cttaagcctcTATAAGCTGTAGTGATAaaactcagat
|
3725795 | 3725812 | 3725803.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
gatatgaataAATTGAAATATCTTATGacgcttctta
|
246141 | 246158 | 246149.0 | nd | , , | [10] | |
Nac | activator | nd | tu | nd |
cttcatgccaTCATAGAGAAAATAAATaaccgcatcg
|
1770808 | 1770825 | 1770816.0 | nd | , , | [10] | |
Nac | activator | ybeT | tu | nd |
tgaattaaatCATCACGATTATTTATTccccaggatg
|
679645 | 679662 | 679653.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tcttcagaaaTATCCGCTATCTTTATTgacaaatcat
|
2990733 | 2990750 | 2990741.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gatgccggacCATAAGCCTCACGAATGcgtttatgtt
|
3716079 | 3716096 | 3716087.0 | nd | , , | [10] | |
Nac | repressor | ddlA | tu | nd |
caacctttatTATAAATAAAAGTTATGaaatatattc
|
401177 | 401194 | 401185.0 | nd | , , | [10] | |
Nac | repressor | eptA | tu | nd |
ttgtcctgacACTAAGCTCTTTCTTATggcttaatcg
|
4335374 | 4335391 | 4335382.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gattttaaatGAATAAGAAATCGTTATggaagctaat
|
801889 | 801906 | 801897.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
attgtgattgGCATAGATAATACTTATccgacaatta
|
3066865 | 3066882 | 3066873.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gagactttttTATTGGATTTACTTATAcggcaacgat
|
3896693 | 3896710 | 3896701.0 | nd | , , | [10] | |
Nac | repressor | yafC | tu | nd |
ttcaacgagcAATTGTATATTGTTATGtaagcaagtg
|
231015 | 231032 | 231023.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gtattggctgTCAGGAATTATTTTTCTtgcctatgga
|
2192762 | 2192779 | 2192770.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gggtgataatACATCCAATTTTTCTCTtattgtcgat
|
3897634 | 3897651 | 3897642.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
aactggttggATATACAAGATTCTTTTgatgcttctg
|
2044048 | 2044065 | 2044056.0 | nd | , , [GEA] | [10] | |
Nac | repressor | nd | tu | nd |
cactacttaaCATTAAATTAACTTATAcaattcagtt
|
1678206 | 1678223 | 1678214.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
acgatttgtcCATAAATGATTATTATCgtaaagttaa
|
234215 | 234232 | 234223.0 | nd | , , | [10] | |
Nac | repressor | abgR | tu | nd |
ttcacgtagcGATAGTTTTTACTTATCactaactgat
|
1404611 | 1404628 | 1404619.0 | nd | , , | [10] | |
Nac | repressor | yebQ | tu | nd |
attcaccaaaGATATAAAATTCCTATGccaaaagttc
|
1910262 | 1910279 | 1910270.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tcttcgccaaCTATCTGCTTTTCTTCTggatcttctg
|
3674084 | 3674101 | 3674092.0 | nd | , , | [10] | |
Nac | repressor | eamA | tu | nd |
ggttttattgCCATTACTTTAGTGAATaacgtgacgc
|
1621597 | 1621614 | 1621605.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
catatattcaCATTAAATATGATTATGtacttgttac
|
3287383 | 3287400 | 3287391.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ttagtgtgctTATCTTTTCTTCTTATGttcaccgcgc
|
1115525 | 1115542 | 1115533.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
cgtgctgatgGACAACCTATTTTTATGgccgcgatag
|
2010188 | 2010205 | 2010196.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
atattcgtccCATAAGGAGTTTTTCTTgattacacat
|
2926293 | 2926310 | 2926301.0 | nd | , , | [10] | |
Nac | repressor | yghT | tu | nd |
ttacctgaacCATCACATCCTACAATGgcaataacac
|
3133888 | 3133905 | 3133896.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tcacaggtgtTCGTCAAATTGAGTTATggcggcgtga
|
4086069 | 4086086 | 4086077.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
caacaaaataGATTAACCAACCTAATGaaaaacaaat
|
2892069 | 2892086 | 2892077.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
atgaacaaatCATTCGCCATGATTATAatatttatcc
|
641899 | 641916 | 641907.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
aaaatctttcCATAACAAATGGTTATTcattaatcct
|
4294254 | 4294271 | 4294262.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
atagcctatgAATAAGCTAACGCTATGatgtccgtgg
|
4428762 | 4428779 | 4428770.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ccagcaaataCATTAGACAAAAATATGggcatcatgg
|
3632989 | 3633006 | 3632997.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tctgccgttcCATAAAGCAAACCAATTcctcggtatg
|
3172983 | 3173000 | 3172991.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ctttcgttaaCATAAGGAGTGCATTATgcgcatagct
|
2215642 | 2215659 | 2215650.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
agcctggtgtAATAACAATTCCCGATAgtcttttgct
|
2859653 | 2859670 | 2859661.0 | nd | , | [10] | |
Nac | repressor | nd | tu | nd |
gcttaccactTATAAAGATTAATTATAaatatataat
|
2249633 | 2249650 | 2249641.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ggtatttgtcCGTATTAAAAAATTATGttggtttctc
|
3252928 | 3252945 | 3252936.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
taatataaatTATATATAAATCTTATTtatgtgatag
|
1996895 | 1996912 | 1996903.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tgccttcctcGGATACGAATATATTATgacgccggtt
|
3226582 | 3226599 | 3226590.0 | nd | , , | [10] | |
Nac | repressor | yfbK | tu | nd |
tatcgaaaccCATAGCAAATAATGATTcaacaacgca
|
2385814 | 2385831 | 2385822.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
cagagtgcgcTATAAATATTCACAATAgggcgcgaat
|
3333499 | 3333516 | 3333507.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ctgaagtaagAATTATCCTAGGGGATGctgtagtgga
|
1633125 | 1633142 | 1633133.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tcacgagtgcTATCATCCGCCCTTATGcttagcgcat
|
1357697 | 1357714 | 1357705.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gcgtcattgcCCATATGAACGAATTATtaatcgccct
|
1517710 | 1517727 | 1517718.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tgaagcatagTGATAAGCTTTTCGTCTtacgagtccc
|
216619 | 216636 | 216627.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ctgaagtaagAATTATCCTAGGGGATGctgtagtgga
|
1434155 | 1434172 | 1434163.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tttttttatcCATTCGAACTCTTTATActggttactc
|
4297158 | 4297175 | 4297166.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
aaatgacgggGATAACCATATTTTATGgcgataacat
|
3267262 | 3267279 | 3267270.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tatgtcgcccTATAACTATACATGATGtcaataagag
|
1655690 | 1655707 | 1655698.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ttacaattcaCATAATTTGTCATTATTcattccgcaa
|
3418272 | 3418289 | 3418280.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ttgcgatgcgCATCAGTAAACGCTATCaacacctggt
|
1919888 | 1919905 | 1919896.0 | nd | , , | [10] | |
Nac | repressor | ycaC | tu | nd |
atctcttcagCATTAGCGTTATGAATGagtaatataa
|
945739 | 945756 | 945747.0 | nd | , , | [10] | |
Nac | repressor | yjgN | tu | nd |
tgtctgtataTATAAGTTATATCAATGgattttttaa
|
4479689 | 4479706 | 4479697.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
atgaacagtcCATCGCTAATTATTATTggtcgggttg
|
3499134 | 3499151 | 3499142.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ttcatgccatCATAGAGAAAATAAATAaccgcatcgg
|
1770809 | 1770826 | 1770817.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
atctcttcagCATTAGCGTTATGAATGagtaatataa
|
945739 | 945756 | 945747.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tcaaataagtCCTAAGTTTTAAATATAtcaaaaatta
|
850405 | 850422 | 850413.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
cttctcaggcGAGAAGCCGTTCTTATTaccggacaat
|
2897893 | 2897910 | 2897901.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ccgcttactcAAGAAGAAAGAATTATGacgttgtctc
|
4609400 | 4609417 | 4609408.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
acgtggcccgGTATCACTTTTCTTAATgactctggct
|
2759168 | 2759185 | 2759176.0 | nd | , , | [10] | |
Nac | repressor | nudG | tu | nd |
gttgttgccgCCATCATTGAACGTGATggcaaaattt
|
1841515 | 1841532 | 1841523.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
acttaataaaTATCAGCTATTCTTATAaagaaaatct
|
2099737 | 2099754 | 2099745.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gcgtcattgcCCATATGAACGAATTATtaatcgccct
|
1517710 | 1517727 | 1517718.0 | nd | , , | [10] | |
Nac | repressor | yaiY | tu | nd |
cgtaattgttAATAAATTTAACTTAAGgttgccattt
|
399494 | 399511 | 399502.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
agatacgtacCATCATTTCCTCCTATAggctgatttc
|
1806356 | 1806373 | 1806364.0 | nd | [AIBSCS], , | [10] | |
Nac | repressor | ykgL | tu | nd |
tttttgataaGAAGAAAAAGACATTTGgtttcataag
|
311568 | 311585 | 311576.0 | nd | , , | [10] | |
Nac | repressor | ligB | tu | nd |
ataaagcctaCATACGAGCTTATTATAcacggcgcgg
|
3821374 | 3821391 | 3821382.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
acggcgtggtTATAAATTTCCGCAATGgcagcacagt
|
1518792 | 1518809 | 1518800.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ttgcccgttgCATAACCTTTAATTATTcatatgcatt
|
4374417 | 4374434 | 4374425.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tggcatgataAATAGGTATAAAGAATGggaaatcgga
|
1755139 | 1755156 | 1755147.0 | nd | , , | [10] | |
Nac | repressor | ycgJ | tu | nd |
acggttggatTATCAGGATGTGCTATGaatatgatgc
|
1226586 | 1226603 | 1226594.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ttcatggctaTCATCCCAAAAAACTATgcgcggttag
|
430612 | 430629 | 430620.0 | nd | , , | [10] | |
Nac | repressor | dld | tu | nd |
tcctactgaaCATAGCCATTTCATATGgatttttctt
|
2221976 | 2221993 | 2221984.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
agcccatgggCATATCATCCCTTTATAgagaaaacga
|
2984192 | 2984209 | 2984200.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ggtgataataCATCCAATTTTTCTCTTattgtcgata
|
3897635 | 3897652 | 3897643.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
atttatattgCCATCACGTTCTGGTATtgggtgcgct
|
1053207 | 1053224 | 1053215.0 | nd | , , | [10] | |
Nac | repressor | yjeH | tu | nd |
tcatcgccgtCATAAGCGAATCTGATTgtgctaccat
|
4370473 | 4370490 | 4370481.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
agactattatCATAGGTAGGCCAAATGaggataaccg
|
2971243 | 2971260 | 2971251.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gtttgaaggcTTATTAGTTATCGATATgacacatgtc
|
2489116 | 2489133 | 2489124.0 | nd | , , | [10] | |
Nac | repressor | kdgR | tu | nd |
attcaccaaaGATATAAAATTCCTATGccaaaagttc
|
1910262 | 1910279 | 1910270.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
gttttgatacGCTAGCGTAGCCTTATAgatctaaggt
|
2089156 | 2089173 | 2089164.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
cagccaatggCATAATGTATATGAATTtgacgactca
|
2413286 | 2413303 | 2413294.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
ctacccgctgGATTGGTAACCCGTATAagaaaaacgc
|
4148594 | 4148611 | 4148602.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
tgattctgttGATATGATCACGTTATAcccaatgtgc
|
3536753 | 3536770 | 3536761.0 | nd | , , | [10] | |
Nac | repressor | nd | tu | nd |
accatatcgcAATAAGTTATGTTTTTAaattgagggc
|
800726 | 800743 | 800734.0 | nd | , , | [10] |
Alignment and PSSM for Nac TFBSs | ![]() |
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Aligned TFBS of Nac |
---|
Sequence | |
---|---|
GGATTTTCTTATGCGGA | |
AAATTTTCTCAGGGGCG | |
GGAATTGCTGATGTCGC | |
TTATTTTTTGATATGTT | |
ATAATCTCTTATTTGAC | |
TATATTTTTTATATGAA | |
TGATTATTGCATGTGTG | |
AGCTTCGTTTATTGCAA | |
GAGTAATCTCATAACCA | |
TCATTCTATTTTAGCCT | |
GATTGTGCTTATGTTGT | |
AAATAATATTGCGGCAA | |
GTATTAATATATAAGGG | |
TCACATTCTTGATGGTA |
Position weight matrix (PWM). Nac matrix-quality result |
---|
A 4 5 10 3 3 4 1 2 1 0 11 1 5 2 0 4 6 C 0 2 1 1 0 3 0 7 0 3 0 1 0 1 5 3 2 G 5 4 1 0 1 0 3 0 1 2 2 1 6 5 8 4 3 T 5 3 2 10 10 7 10 5 12 9 1 11 3 6 1 3 3 |
Consensus |
---|
; consensus.strict ggattttcTtatgggga ; consensus.strict.rc TCCCCATAAGAAAATCC ; consensus.IUPAC krattykyTyatrkssr ; consensus.IUPAC.rc YSSMYATRARMRAATYM ; consensus.regexp [gt][ag]att[ct][gt][ct]T[ct]at[ag][gt][cg][cg][ag] ; consensus.regexp.rc [CT][CG][CG][AC][CT]AT[AG]A[AG][AC][AG]AAT[CT][AC] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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