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Synonyms: H-NS |
Summary:
The H-NS protein, for "Histone-like nucleoid structuring protein," is a nucleoid-associated multifunctional protein that is capable of condensing |CITS: [10982869]| and supercoiling DNA |CITS: [16384714][15853876][11282470][8306968]|. It is a global transcriptional silencer of genes with high AT content |CITS: [15100692][18387844]|, regulates 5% of all Escherichia coli genes |CITS: [11298273]|, and plays a key role in global chromosome organization in bacteria |CITS: [21903814]|. This protein acts as a pleiotropic transcriptional factor with a strong preference for horizontally acquired genes among the 250 loci to which it binds |CITS: [2126011][17046956][31960057]|. H-NS functions almost exclusively as a transcriptional repressor, although there is no clear evidence that this regulator is an activator. Currently, no inducer for this regulator has been reported in the literature, although Reush et al. proposed that this regulator can form a complex with a short chain of polyhydroxybutyrate |CITS: [12220682]|. Additional genes might be identified by high-throughput analysis |CITS: [19151137]|. H-NS suppresses transcription initiation at many intragenic sites as well as transcription of non-coding RNAs genome-wide |CITS: [24449106]|, such as antisense RNAs located in regions enriched with RNA polymerase-binding RNA aptamers (RAPs) |CITS: [31535128]|. H-NS plays an important role in the regulation of many genes in response to environmental changes and adaptation to stress; therefore, it is capable of controlling its own synthesis |CITS: [7934818][8830277]|. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | HNS | ||||||||||||
Sensing class: | TFs for DNA-bending | ||||||||||||
Connectivity class: | Global Regulator | ||||||||||||
Gene name: | hns | ||||||||||||
Genome position: | 1292509-1292922 | ||||||||||||
Length: | 414 bp / 137 aa | ||||||||||||
Operon name: | hns | ||||||||||||
TU(s) encoding the TF: |
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Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence (Confirmed, Strong, Weak) | References | |
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H-NS | repressor | acrEp | Sigma70 | nd | nd | acrE, acrF | nd | nd | [GEA] | [26] | ||
H-NS | repressor | adep | Sigma70 | nd | nd | adeD | nd | nd | [GEA] | [27] | ||
H-NS | repressor | adiAp | Sigma70 | nd | nd | adiA | nd | nd | [GEA] | [28] | ||
H-NS | repressor | adiYp | nd | nd | nd | adiY | nd | nd | [BPP] | [29] | ||
H-NS | repressor | appYp | Sigma70 | nd | nd | appY | nd | nd | [BPP], [GEA] | [30] | ||
H-NS | repressor | asrp | Sigma38, Sigma70 | nd | nd | asr | nd | nd | [CV(GEA)], [GEA], [IMP] | [31] | ||
H-NS | repressor | bglGp | nd | 680.0 | 550.0 | bglG, bglF, bglB |
agttaatgcgCGAAATGCTGCAATTaataaaattt
|
3906011 | 3906025 | [BPP], [GEA] | [32], [33], [34], [35] | |
H-NS | repressor | bolAp1 | Sigma38, Sigma70 | nd | nd | bolA | nd | nd | [GEA] | [36] | ||
H-NS | repressor | cadBp | Sigma70 | -317.0 | -392.0 | cadB, cadA |
ccttatgttgTACCTTATCTCGACAaatttcttgc
|
4360416 | 4360430 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [29], [37], [38] | |
H-NS | repressor | cadBp | Sigma70 | -260.0 | -335.0 | cadB, cadA |
tgatttatgcTCGGAAATATTTGTTgttgagtttt
|
4360359 | 4360373 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [28], [29], [37] | |
H-NS | repressor | cadBp | Sigma70 | -175.0 | -250.0 | cadB, cadA |
tttttattacATAAATTTAACCAGAgaatgtcacg
|
4360274 | 4360288 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [28], [29], [37] | |
H-NS | repressor | cadBp | Sigma70 | -129.0 | -204.0 | cadB, cadA |
aaacattaaaTGTTTATCTTTTCATgatatcaact
|
4360228 | 4360242 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [28], [29], [37] | |
H-NS | repressor | cadBp | Sigma70 | -32.0 | -107.0 | cadB, cadA |
tcacctaatcTTTAGGATTAATCCTtttttcgtga
|
4360131 | 4360145 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [28], [29], [37] | |
H-NS | repressor | cadCp | Sigma70 | nd | nd | cadC | nd | nd | [BPP] | [29] | ||
H-NS | repressor | caiFp | Sigma70 | nd | nd | caiF | nd | nd | [GEA] | [39] | ||
H-NS | repressor | caiTp | Sigma70 | nd | nd | caiT, caiA, caiB, caiC, caiD, caiE | nd | nd | [IMP] | [40] | ||
H-NS | repressor | casAp | Sigma70 | -46.0 | -227.0 | casA, casB, casC, casD, casE, cas1, cas2 |
aagtttctttAATAATAAAACGAATaacttgcaga
|
2884358 | 2884372 | [BPP], [GEA] | [41], [42], [43], [44] | |
H-NS | repressor | chiAp | Sigma70 | nd | nd | chiA | nd | nd | [BPP], [GEA] | [45] | ||
H-NS | activator | cmoMp | Sigma70 | nd | nd | cmoM, mukF, mukE, mukB | nd | nd | [GEA] | [46] | ||
H-NS | repressor | csgDp1 | Sigma38, Sigma70 | nd | nd | csgD, csgE, csgF, csgG | nd | nd | [BPP], [GEA] | [47] | ||
H-NS | activator | csiDp | Sigma38 | nd | nd | glaH, lhgD, gabD, gabT, gabP | nd | nd | [GEA] | [48] | ||
H-NS | activator | csiEp | Sigma70, Sigma38 | nd | nd | csiE | nd | nd | [GEA] | [36] | ||
H-NS | repressor | cspAp1 | Sigma70 | -143.5 | -303.5 | cspA |
aagccaacccGGCATTAAGTAagcagttgat
|
3719741 | 3719751 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [13], [49] | |
H-NS | repressor | cspAp1 | Sigma70 | -105.5 | -265.5 | cspA |
acttttatccACTTTATTGCTgtttacggtc
|
3719779 | 3719789 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [13], [49] | |
H-NS | repressor | cspAp1 | Sigma70 | -58.0 | -218.0 | cspA |
cgttttccaaCCGATTAATCATAAATATgaaaaataat
|
3719823 | 3719840 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [49] | |
H-NS | repressor | cspAp1 | Sigma70 | -9.5 | -169.5 | cspA |
ccaatgcgtgGCTTAATGCACatcaacggtt
|
3719875 | 3719885 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [13], [49] | |
H-NS | repressor | cspAp1 | Sigma70 | 23.5 | -137.5 | cspA |
gacgtacagaCCATTAAAGCAgtgtagtaag
|
3719907 | 3719917 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [13], [49] | |
H-NS | activator | cspDp | Sigma70 | nd | nd | cspD | nd | nd | [GEA] | [50] | ||
H-NS | repressor | cydAp1 | Sigma70 | nd | nd | cydA, cydB | nd | nd | [BPP], [GEA] | [51] | ||
H-NS | repressor | cydAp2 | Sigma70 | nd | nd | cydA, cydB | nd | nd | [BPP], [GEA] | [51] | ||
H-NS | repressor | cydAp3 | Sigma70 | nd | nd | cydA, cydB | nd | nd | [BPP], [GEA] | [51] | ||
H-NS | repressor | cydAp4 | Sigma70 | nd | nd | cydA, cydB | nd | nd | [BPP], [GEA] | [51] | ||
H-NS | repressor | cysPp | Sigma70 | nd | nd | cysP, cysU, cysW, cysA, cysM | nd | nd | [GEA] | [52] | ||
H-NS | repressor | degPp | Sigma24 | nd | nd | degP | nd | nd | [GEA] | [53] | ||
H-NS | repressor | dpsp | Sigma70, Sigma38 | 3.5 | -36.5 | dps |
tatacttaatCTCGTTAATTActgggacata
|
848943 | 848953 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [54] | |
H-NS | repressor | evgAp1 | Sigma38 | nd | nd | evgA, evgS | nd | nd | [BPP] | [29] | ||
H-NS | repressor | evgAp2 | Sigma70 | nd | nd | evgA, evgS | nd | nd | [BPP] | [29] | ||
H-NS | activator | fesp | Sigma70 | -0.5 | -50.5 | fes, ybdZ, entF, fepE |
tatcaataatATTATCAATATATTTctgcaatcaa
|
612679 | 612693 | [GEA] | [52] | |
H-NS | activator | fimAp | Sigma70 | nd | nd | fimA, fimI, fimC, fimD, fimF, fimG, fimH | nd | nd | [BPP], [GEA] | [55] | ||
H-NS | repressor | fimBp1 | Sigma70 | nd | nd | fimB | nd | nd | [BPP], [GEA] | [56], [57], [58] | ||
H-NS | repressor | fimBp2 | nd | nd | nd | fimB | nd | nd | [BPP], [GEA] | [56], [57], [58] | ||
H-NS | repressor | fimEp | Sigma70 | nd | nd | fimE | nd | nd | [BPP], [GEA] | [58], [59] | ||
H-NS | activator | flhDp | Sigma70 | nd | nd | flhD, flhC | nd | nd | [BPP], [GEA] | [60], [61] | ||
H-NS | activator | fliAp1 | Sigma70 | nd | nd | fliA, fliZ, tcyJ | nd | nd | [CV(GEA)], [GEA], [IMP] | [60] | ||
H-NS | activator | fliCp | Sigma28 | nd | nd | fliC | nd | nd | [GEA] | [62] | ||
H-NS | repressor | ftnAp | Sigma70 | -131.5 | -165.5 | ftnA |
ctttctctaaATATTTTAATCagcgagggga
|
1988546 | 1988556 | [BPP], [GEA] | [63] | |
H-NS | repressor | ftnAp | Sigma70 | -101.5 | -135.5 | ftnA |
aggggatcttCGCTGATTAAAGAAATAGCGGtaatgcgttt
|
1988571 | 1988591 | [BPP], [GEA] | [63] | |
H-NS | repressor | ftnAp | Sigma70 | -83.0 | -117.0 | ftnA |
aagaaatagcGGTAATGCGTTTTATTCCCAttcgtatttt
|
1988590 | 1988609 | [BPP], [GEA] | [63] | |
H-NS | repressor | ftnAp | Sigma70 | -56.0 | -90.0 | ftnA |
ttttattcccATTCGTATTTTTAATAATTGAAGTTTATATTTTACCttttgcaaat
|
1988609 | 1988644 | [BPP], [GEA] | [63] | |
H-NS | repressor | ftnAp | Sigma70 | -20.5 | -54.5 | ftnA |
tattttacctTTTGCAAATAATAAAATAACAAATTATAGTGACgccacagcaa
|
1988646 | 1988678 | [BPP], [GEA] | [63] | |
H-NS | repressor | ftnAp | Sigma70 | 15.5 | -19.5 | ftnA |
acgccacagcAACAAATATAACCTTTGTGGAgcactatcat
|
1988687 | 1988707 | [BPP], [GEA] | [63] | |
H-NS | repressor | gadAp | Sigma38, Sigma70, Sigma38, Sigma70 | nd | nd | gadA, gadX | nd | nd | [BPP], [GEA] | [9], [64], [65] | ||
H-NS | repressor | gadEp | Sigma38 | nd | nd | gadE, gadF, mdtE, mdtF | nd | nd | [BPP] | [29] | ||
H-NS | repressor | gadWp2 | nd | nd | nd | gadW | nd | nd | [BPP] | [29] | ||
H-NS | repressor | gadXp | Sigma38 | nd | nd | gadX, gadW | nd | nd | [BPP], [GEA] | [9], [66] | ||
H-NS | repressor | galEp1 | Sigma70, Sigma38 | -47.0 | -73.0 | galE, galT, galK, galM |
aaacgattccACTAATTTATTCCATgtcacacttt
|
792121 | 792135 | [BPP] | [67] | |
H-NS | repressor | galEp1 | Sigma70, Sigma38 | -36.0 | -62.0 | galE, galT, galK, galM |
ctaatttattCCATGTCACACTTTTcgcatctttg
|
792110 | 792124 | [BPP] | [67] | |
H-NS | repressor | galEp1 | Sigma70, Sigma38 | -18.0 | -44.0 | galE, galT, galK, galM |
cacttttcgcATCTTTGTTATGCTAtggttatttc
|
792092 | 792106 | [BPP] | [67] | |
H-NS | repressor | galEp1 | Sigma70, Sigma38 | -2.0 | -28.0 | galE, galT, galK, galM |
gttatgctatGGTTATTTCATACCAtaagcctaat
|
792076 | 792090 | [BPP] | [67] | |
H-NS | repressor | garPp | Sigma70 | nd | nd | garP, garL, garR, garK, rnpB | nd | nd | [GEA] | [52] | ||
H-NS | repressor | gspAp1 | Sigma70 | nd | nd | gspA, gspB | nd | nd | [BPP], [GEA] | [68] | ||
H-NS | repressor | gspAp2 | Sigma70 | nd | nd | gspA, gspB | nd | nd | [BPP], [GEA] | [68] | ||
H-NS | repressor | gspCp2 | Sigma70 | nd | nd | gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO | nd | nd | [BPP], [GEA] | [68] | ||
H-NS | repressor | gspCp3 | Sigma70 | nd | nd | gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO | nd | nd | [BPP], [GEA] | [68] | ||
H-NS | repressor | hchAp | Sigma70 | nd | nd | hchA | nd | nd | [BPP], [GEA] | [69] | ||
H-NS | repressor | hchAp2 | Sigma38 | nd | nd | hchA | nd | nd | [BPP], [GEA] | [69] | ||
H-NS | repressor | hdeAp | Sigma38, Sigma70, Sigma70, Sigma38 | -118.0 | -169.0 | hdeA, hdeB, yhiD |
tgcagtcgatTTAATAAAAATTTCCtaattgcagt
|
3656902 | 3656916 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [70], [71], [72] | |
H-NS | repressor | hdeDp | Sigma38, Sigma70 | nd | nd | hdeD | nd | nd | [BPP], [GEA] | [72] | ||
H-NS | repressor | hdfRp | Sigma38 | nd | nd | hdfR | nd | nd | [BPP] | [29] | ||
H-NS | activator | hisJp | Sigma70 | nd | nd | hisJ, hisQ, hisM, hisP | nd | nd | [GEA] | [52] | ||
H-NS | activator | hlyEp | nd | -56.5 | -128.5 | hlyE |
attgtttgatATTTATCATATTAATagaaataaag
|
1230515 | 1230529 | [BPP], [GEA] | [73], [74], [75] | |
H-NS | repressor | hlyEp | nd | -56.5 | -128.5 | hlyE |
attgtttgatATTTATCATATTAATagaaataaag
|
1230515 | 1230529 | [BPP], [GEA] | [73], [74], [75] | |
H-NS | activator | hlyEp | nd | -6.0 | -78.0 | hlyE |
gcccggctaaCTATGAATTAGATGAagtaaaattt
|
1230465 | 1230479 | [BPP], [GEA] | [73], [74], [75] | |
H-NS | repressor | hlyEp | nd | -6.0 | -78.0 | hlyE |
gcccggctaaCTATGAATTAGATGAagtaaaattt
|
1230465 | 1230479 | [BPP], [GEA] | [73], [74], [75] | |
H-NS | repressor | hnsp | Sigma70 | -182.0 | -218.0 | hns |
cccataaaatGTGACATGAATCAGGaagttttaac
|
1293133 | 1293147 | [BPP], [GEA] | [8], [20], [76], [77] | |
H-NS | repressor | hnsp | Sigma70 | -113.0 | -149.0 | hns |
ctatatgccgCGTCTTTTCTGGCTAattttatgaa
|
1293064 | 1293078 | [BPP], [GEA] | [8], [20], [76], [77] | |
H-NS | repressor | hnsp | Sigma70 | -40.0 | -76.0 | hns |
gaattccttaCATTCCTGGCTATTGcacaactgaa
|
1292991 | 1293005 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [8], [20], [76], [77], [78] | |
H-NS | repressor | ilvIHp1 | Sigma70 | nd | nd | ilvI, ilvH | nd | nd | [GEA] | [79] | ||
H-NS | repressor | lacZp1 | Sigma70 | -67.0 | -105.0 | lacZ, lacY, lacA |
gcgcaacgcaATTAATGTGAGTTAGctcactcatt
|
366403 | 366417 | [BPP] | [67], [80] | |
H-NS | repressor | lacZp1 | Sigma70 | -54.0 | -92.0 | lacZ, lacY, lacA |
aatgtgagttAGCTCACTCATTAGGcaccccaggc
|
366390 | 366404 | [BPP] | [67], [80] | |
H-NS | repressor | lacZp1 | Sigma70 | -31.0 | -69.0 | lacZ, lacY, lacA |
ggcaccccagGCTTTACACTTTATGcttccggctc
|
366367 | 366381 | [BPP] | [67], [80] | |
H-NS | repressor | lacZp1 | Sigma70 | -5.0 | -43.0 | lacZ, lacY, lacA |
ttccggctcgTATGTTGTGTGGAATtgtgagcgga
|
366341 | 366355 | [BPP] | [67], [80] | |
H-NS | repressor | lacZp1 | Sigma70 | 6.0 | -33.0 | lacZ, lacY, lacA |
tatgttgtgtGGAATTGTGAGCGGAtaacaatttc
|
366331 | 366345 | [BPP] | [67], [80] | |
H-NS | repressor | lacZp1 | Sigma70 | 24.0 | -15.0 | lacZ, lacY, lacA |
gagcggataaCAATTTCACACAGGAaacagctatg
|
366313 | 366327 | [BPP] | [67], [80] | |
H-NS | repressor | leuOp | Sigma70 | -96.0 | -276.0 | leuO |
aaattaattaTTAAATAAGCACATTtaatccattt
|
84085 | 84099 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [81], [82] | |
H-NS | repressor | leuOp2 | nd | -212.0 | -276.0 | leuO |
aaattaattaTTAAATAAGCACATTtaatccattt
|
84085 | 84099 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [81], [82] | |
H-NS | repressor | lrpp | Sigma70 | nd | nd | lrp | nd | nd | [BPP], [GEA] | [83] | ||
H-NS | repressor | mdtJp | Sigma70 | -10.5 | -288.5 | mdtJ, mdtI |
attcttaagcTATGATACAAAtcaggcgtgt
|
1673785 | 1673795 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [84] | |
H-NS | repressor | mdtJp | Sigma70 | 240.5 | -38.5 | mdtJ, mdtI |
tggtttcgctGAATTAAGCGAaaattaaaat
|
1673535 | 1673545 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [84] | |
H-NS | repressor | mdtJp | Sigma70 | 288.5 | 10.5 | mdtJ, mdtI |
aggacaatgtATATTTATTGGattttattag
|
1673487 | 1673497 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [84] | |
H-NS | repressor | micFp | Sigma38, Sigma70 | nd | nd | micF | nd | nd | [GEA] | [85], [86] | ||
H-NS | repressor | nhaAp1 | Sigma70 | nd | nd | nhaA, nhaR | nd | nd | [GEA] | [87] | ||
H-NS | repressor | nirBp | Sigma70 | nd | nd | nirB, nirD, nirC, cysG | nd | nd | [BPP], [GEA] | [88], [89] | ||
H-NS | repressor | nrdAp | Sigma70 | -439.0 | -549.0 | nrdA, nrdB, yfaE |
gtgcgtcataATTCAAGTTAATAACcttcagggat
|
2344309 | 2344323 | [BPP], [CV(SM)], [GEA], [SM] | [90] | |
H-NS | repressor | nrdAp | Sigma70 | -415.0 | -525.0 | nrdA, nrdB, yfaE |
ccttcagggaTATCAGTTATATTTAaactaaatta
|
2344333 | 2344347 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [90] | |
H-NS | repressor | nrdDp | Sigma70 | nd | nd | nrdD, nrdG | nd | nd | [BPP], [GEA] | [90] | ||
H-NS | repressor | osmCp1 | Sigma70 | nd | nd | osmC | nd | nd | [GEA] | [91] | ||
H-NS | repressor | osmCp2 | Sigma38 | nd | nd | osmC | nd | nd | [GEA] | [91] | ||
H-NS | repressor | proVp1 | Sigma70, Sigma38 | nd | nd | proV, proW, proX | nd | nd | [BPP], [GEA] | [92], [93] | ||
H-NS | repressor | proVp3 | Sigma70 | -33.0 | -93.0 | proV, proW, proX |
atttgccatcAGGGGTTGCCTCAGAttctcagtat
|
2804715 | 2804729 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 7.0 | -54.0 | proV, proW, proX |
gggtagaaaaAAGTGACTATTTCCAttgggtaata
|
2804754 | 2804768 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 26.0 | -35.0 | proV, proW, proX |
tttccattggGTAATATATCGACATagacaaataa
|
2804773 | 2804787 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 45.0 | -16.0 | proV, proW, proX |
cgacatagacAAATAAAGGAATCTTtctattgcat
|
2804792 | 2804806 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 72.0 | 12.0 | proV, proW, proX |
tattgcatggCAATTAAATTAGAAAttaaaaatct
|
2804819 | 2804833 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 84.0 | 24.0 | proV, proW, proX |
attaaattagAAATTAAAAATCTTTataaaatatt
|
2804831 | 2804845 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 100.0 | 40.0 | proV, proW, proX |
aaaatctttaTAAAATATTTGGCGAgcatccacag
|
2804847 | 2804861 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 130.0 | 70.0 | proV, proW, proX |
cacagcgagcGTTCAAATATATCGAacaaggactt
|
2804877 | 2804891 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 156.0 | 96.0 | proV, proW, proX |
caaggactttCAAAAGAACAAATTCtggaaaaaac
|
2804903 | 2804917 | [BPP] | [92], [93], [94] | |
H-NS | repressor | proVp3 | Sigma70 | 170.0 | 110.0 | proV, proW, proX |
agaacaaattCTGGAAAAAACTGGGctatcgcttg
|
2804917 | 2804931 | [BPP] | [92], [93], [94] | |
H-NS | repressor | rcsAp | Sigma70 | nd | nd | rcsA | nd | nd | [CV(GEA)], [GEA], [ICWHO] | [95], [96], [97], [98] | ||
H-NS | repressor | rcsDp | Sigma70 | nd | nd | rcsD, rcsB | nd | nd | [BPP] | [29] | ||
H-NS | activator | relAp2 | Sigma70 | nd | nd | relA, mazE, mazF | nd | nd | [GEA] | [99] | ||
H-NS | repressor | rrsBp1 | Sigma32, Sigma70 | -83.0 | -375.0 | rrsB, gltT, rrlB, rrfB |
actggcagttTTAGGCTGATTTGGTtgaatgttgc
|
4166277 | 4166291 | [BPP] | [100] | |
H-NS | repressor | rrsBp1 | Sigma32, Sigma70 | -50.0 | -342.0 | rrsB, gltT, rrlB, rrfB |
gcgcggtcagAAAATTATTTTAAATttcctcttgt
|
4166310 | 4166324 | [BPP] | [100] | |
H-NS | repressor | rrsBp1 | Sigma32, Sigma70 | -26.0 | -318.0 | rrsB, gltT, rrlB, rrfB |
tttcctcttgTCAGGCCGGAATAACtccctataat
|
4166334 | 4166348 | [BPP] | [100] | |
H-NS | repressor | rrsCp1 | Sigma32, Sigma70 | nd | nd | rrsC, gltU, rrlC, rrfC | nd | nd | [GEA] | [101], [102] | ||
H-NS | repressor | rrsDp1 | Sigma32, Sigma70 | nd | nd | rrsD, ileU, alaU, rrlD, rrfD, thrV, rrfF | nd | nd | [GEA] | [101], [102] | ||
H-NS | repressor | rrsGp1 | Sigma32, Sigma70 | nd | nd | rrsG, gltW, rrlG, rrfG | nd | nd | [CV(GEA)], [GEA], [TAS] | [101], [102] | ||
H-NS | repressor | rrsHp1 | Sigma32, Sigma70 | nd | nd | rrsH, ileV, alaV, rrlH, rrfH | nd | nd | [GEA] | [101], [102] | ||
H-NS | repressor | slpp | Sigma70 | nd | nd | slp, dctR | nd | nd | [BPP] | [29] | ||
H-NS | activator | srlAp | Sigma70 | nd | nd | srlA, srlE, srlB, srlD, gutM, srlR, gutQ | nd | nd | [GEA] | [52] | ||
H-NS | repressor | ssrSp1 | Sigma70 | nd | nd | ssrS, fau | nd | nd | [BPP], [GEA] | [103] | ||
H-NS | repressor | ssrSp2 | Sigma38, Sigma70 | nd | nd | ssrS, fau | nd | nd | [BPP], [GEA] | [103] | ||
H-NS | repressor | stpAp1 | Sigma70 | nd | nd | stpA | nd | nd | [BCE], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [18], [104] | ||
H-NS | repressor | yciGp | Sigma38 | -88.5 | -145.5 | yciG, yciF, yciE |
aggtaattgtTAATATATCCAgaatgttcct
|
1316176 | 1316186 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [72], [105] | |
H-NS | repressor | yciGp | Sigma38 | -65.5 | -122.5 | yciG, yciF, yciE |
atgttcctcaAAATATATTTTccctctatct
|
1316153 | 1316163 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [72], [105] | |
H-NS | repressor | ydeOp | Sigma32 | nd | nd | ydeO | nd | nd | [BPP] | [29] | ||
H-NS | repressor | ydePp | Sigma70 | nd | nd | ydeP | nd | nd | [BPP] | [29] | ||
H-NS | repressor | yhiMp | Sigma38 | nd | nd | yhiM | nd | nd | [BPP] | [29] | ||
H-NS | repressor | yjjPp | nd | -174.5 | -350.5 | yjjP |
agaaatcacaTTCATTTAATTtataattaaa
|
4603204 | 4603214 | [BPP] | [106] | |
H-NS | repressor | yjjPp | nd | -161.5 | -337.5 | yjjP |
atttaatttaTAATTAAATGAtatcccttcc
|
4603191 | 4603201 | [BPP] | [106] | |
H-NS | repressor | yjjQp | Sigma70 | -123.5 | -281.5 | yjjQ, bglJ |
ggaagggataTCATTTAATTAtaaattaaat
|
4603191 | 4603201 | [BPP] | [106] | |
H-NS | repressor | yjjQp | Sigma70 | -110.5 | -268.5 | yjjQ, bglJ |
tttaattataAATTAAATGAAtgtgatttct
|
4603204 | 4603214 | [BPP] | [106] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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