![]() ![]() |
Synonyms: OxyR |
Summary:
OxyR, "oxidative stress regulator," is the transcriptional dual regulator for the expression of antioxidant genes in response to oxidative stress, in particular, elevated levels of hydrogen peroxide. The OxyR regulon includes genes involved in peroxide metabolism, redox balance, and peroxide protection by, for example, manganese uptake [23, 26] Moreover, OxyR activates the synthesis of the small, noncoding oxyS RNA. This allows OxyR to regulate as many as 40 additional gene products indirectly by affecting mRNA stability or translation efficiency [37] OxyR acts as a repressor for its own synthesis in both the oxidized and reduced forms [3, 6] Accordingly, point mutations observed in oxyR as a result of adaptive evolution under high iron conditions lead to increased expression levels of OxyR-regulated genes, also termed the OxyR i-modulon []. For more information on i-modulons, see []. Read more > |
Transcription factor | ![]() ![]() |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF conformation(s): |
|
||||||||||||
Evolutionary Family: | LysR | ||||||||||||
Sensing class: | Using internal synthesized signals | ||||||||||||
Connectivity class: | Local Regulator | ||||||||||||
Gene name: | oxyR | ||||||||||||
Genome position: | 4158490-4159407 | ||||||||||||
Length: | 918 bp / 305 aa | ||||||||||||
Operon name: | oxyR | ||||||||||||
TU(s) encoding the TF: |
|
Regulon |
![]() ![]() |
||||||
---|---|---|---|---|---|---|---|
Regulated gene(s) | ahpC, ahpF, ccp, dps, dsbG, elaB, fhuF, flu, fur, gntP, gor, grxA, hcp, hcr, hemH, isrC, katG, metE, metR, mntH, nfsA, oxyR, oxyS, poxB, rimK, sufA, sufB, sufC, sufD, sufE, sufS, trxC, uof, uxuA, uxuB, ybjC, ybjN, ychF, yjjZ, zinT, znuA, znuB, znuC | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
incorporation of metal ions (6)
sulfur metabolism (6)
detoxification (4)
membrane (4)
Transcription related (3)
Read more >
|
||||||
Regulated operon(s) | ahpCF, ccp, dps, dsbG, elaB, fhuF, fldA-uof-fur, gntP, gor, grxA, hcp-hcr-poxB-ltaE-ybjT, hemH, isrC-flu, katG, metE, metR, mntH, oxyR, oxyS, pth-ychF, sufABCDSE, trxC, uxuAB, ybjC-nfsA-rimK-ybjN, yjjZ, zinT, znuA, znuCB | ||||||
First gene in the operon(s) | ahpC, dps, elaB, fhuF, isrC, gntP, gor, grxA, hcp, hemH, katG, metE, metR, mntH, oxyR, oxyS, sufA, trxC, uof, uxuA, ybjC, ychF, ccp, yjjZ, zinT, znuA, znuC, dsbG | ||||||
Simple and complex regulons | CRP,ExuR,OxyR,UxuR CRP,OxyR CRP,OxyR,UxuR FNR,Fur,OxyR FNR,NarL,NarP,NsrR,OxyR Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
![]() |
---|
Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Growth Conditions | Evidence (Confirmed, Strong, Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
OxyR | activator | ahpCp | Sigma70 | -66.0 | -90.0 | ahpC, ahpF |
tacgaaggttGTAAGGTAAAACTTATCgatttgataa
|
638847 | 638863 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [9], [10], [11], [12], [13] | |
OxyR | activator | ahpCp | Sigma70 | -44.0 | -68.0 | ahpC, ahpF |
ttatcgatttGATAATGGAAACGCATTagccgaatcg
|
638869 | 638885 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [9], [10], [11], [12], [13], [14] | |
OxyR | activator | ahpCp2 | Sigma70 | -76.0 | -328.0 | ahpC, ahpF |
aaagtcgagtAAAAGGCATAACCTATCactgtcatag
|
638609 | 638625 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [13] | |
OxyR | activator | ahpCp2 | Sigma70 | -53.0 | -305.0 | ahpC, ahpF |
tatcactgtcATAGGTAAGAGCTTAGAtcaggtgatt
|
638632 | 638648 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [13], [15] | |
OxyR | activator | dpsp | Sigma70, Sigma38 | -66.0 | -105.0 | dps |
ttgtttttcaCGCTTGTTACCACTATTagtgtgatag
|
849008 | 849024 | nd | [APIORCISFBSCS] | [16] | |
OxyR | activator | dpsp | Sigma70, Sigma38 | -44.0 | -83.0 | dps |
ctattagtgtGATAGGAACAGCCAGAAtagcggaaca
|
848986 | 849002 | nd | [APIORCISFBSCS] | [16] | |
OxyR | activator | dpsp | Sigma70, Sigma38 | -17.0 | -56.0 | dps |
tagcggaacaCATAGCCGGTGCTATACttaatctcgt
|
848959 | 848975 | nd | , [IHBCE], | [15] | |
OxyR | activator | dsbGp | nd | -77.0 | -304.0 | dsbG |
cgattcggctAATGCGTTTCCATTATCaaatcgataa
|
638869 | 638885 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [10], [11], [12], [13], [14] | |
OxyR | activator | dsbGp | nd | -55.0 | -282.0 | dsbG |
ttatcaaatcGATAAGTTTTACCTTACaaccttcgta
|
638847 | 638863 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [10], [11], [12], [13] | |
OxyR | activator | elaBp | Sigma38 | -31.0 | -57.0 | elaB |
cacattgggaTGGCACGCGAGGTAATTCAGGCGTAATCAACAACCCTTGTCTATAGTtagtgacagg
|
2381061 | 2381107 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [SM] | [17] | |
OxyR | repressor | elaBp | Sigma38 | -31.0 | -57.0 | elaB |
cacattgggaTGGCACGCGAGGTAATTCAGGCGTAATCAACAACCCTTGTCTATAGTtagtgacagg
|
2381061 | 2381107 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [SM] | [17] | |
OxyR | repressor | fhuFp | Sigma70 | -105.0 | -136.0 | fhuF |
gtacgttgcaACATGATTTCATCTCTTtcattgataa
|
4605791 | 4605807 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [13] | |
OxyR | repressor | fhuFp | Sigma70 | -83.0 | -114.0 | fhuF |
ctctttcattGATAATGATAACCAATAtcatatgata
|
4605769 | 4605785 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [13] | |
OxyR | repressor | fhuFp | Sigma70 | -21.0 | -52.0 | fhuF |
aatcccttgcTATCGGGTAAACCTATCgctatgatta
|
4605707 | 4605723 | nd | , [IHBCE], | [13], [15] | |
OxyR | repressor | fhuFp | Sigma70 | 2.0 | -30.0 | fhuF |
ctatcgctatGATTAGCAATCATTATCatttagatta
|
4605685 | 4605701 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [13], [15] | |
OxyR | repressor | flup | Sigma70 | -26.0 | -26.0 | isrC, flu |
actgtctctcTTGTCCGTGCAATAGCTcaataataga
|
2071283 | 2071299 | nd | , [IHBCE], | [15] | |
OxyR | repressor | flup | Sigma70 | 2.0 | 2.0 | isrC, flu |
caataatagaATAAAACGATCAATATCtattttatcg
|
2071310 | 2071326 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [SM] | [18], [19], [20], [21], [22] | |
OxyR | repressor | flup | Sigma70 | 24.0 | 24.0 | isrC, flu |
atatctatttTATCGATCGTTTATATCgatcgataag
|
2071332 | 2071348 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [IHBCE], , [SM] | [15], [18], [19], [20], [21], [22] | |
OxyR | repressor | gntPp | Sigma70 | -152.0 | -190.0 | gntP |
cttttggtaaGACATGTCAACCCGAATtctgaaattg
|
4551478 | 4551494 | nd | [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] | [23] | |
OxyR | repressor | gntPp | Sigma70 | -130.0 | -168.0 | gntP |
cgaattctgaAATTGGTTAACCACATCacaagaattt
|
4551456 | 4551472 | nd | [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] | [23] | |
OxyR | activator | gorp | Sigma70, Sigma38 | nd | nd | gor | nd | nd | nd | [GEA] | [24] | ||
OxyR | activator | grxAp | nd | -66.0 | -89.0 | grxA |
gtttaacagtTATAGCTTTTAGCAATTaatgcaacag
|
890834 | 890850 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [15], [23], [25] | |
OxyR | activator | grxAp | nd | -44.0 | -67.0 | grxA |
caattaatgcAACAGGTTAAACCTACTttcagcgaat
|
890812 | 890828 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [23], [25] | |
OxyR | activator | grxAp | nd | 8.0 | -16.0 | grxA |
tcattacaggCATAAATCTATGAGGAGagaaataatg
|
890761 | 890777 | nd | , [IHBCE], | [15] | |
OxyR | activator | hcpp | nd | nd | nd | hcp, hcr, poxB | nd | nd | nd | [BPP], [GEA] | [4] | ||
OxyR | activator | hemHp | Sigma70 | -55.0 | -79.0 | hemH |
ctattcctttTTCTGATTTGACCTCTCacagcaatta
|
497968 | 497984 | nd | [BPP], [GEA] | [23] | |
OxyR | activator | hemHp | Sigma70 | -33.0 | -57.0 | hemH |
ctctcacagcAATTAGTTCTTCTTCCTcacttttccg
|
497990 | 498006 | nd | [BPP], [GEA] | [23] | |
OxyR | activator | katGp | Sigma70 | -66.0 | -89.0 | katG |
ccaacaatatGTAAGATCTCAACTATCgcatccgtgg
|
4133738 | 4133754 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [10], [11], [12], [13], [14], [15] | |
OxyR | activator | katGp | Sigma70 | -44.0 | -67.0 | katG |
ctatcgcatcCGTGGATTAATTCAATTataacttctc
|
4133760 | 4133776 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [10], [11], [12], [13], [14] | |
OxyR | activator | katGp | Sigma70 | 2.0 | -22.0 | katG |
tgtgtatcgtAACGGTAACACTGTAGAggggagcaca
|
4133805 | 4133821 | nd | , [IHBCE], | [15] | |
OxyR | activator | metEp | nd | -42.0 | -211.0 | metE |
cttcacttcgGCATGAATAATTTGCGCttgaggaata
|
4012834 | 4012850 | nd | , [IHBCE], | [15] | |
OxyR | activator | metRp1 | nd | -5.0 | -44.0 | metR |
taattggcggTTACTGTATATTCCTCAagcgcaaatt
|
4012852 | 4012868 | nd | , [IHBCE], | [15] | |
OxyR | activator | mntHp | Sigma70, Sigma70 | -76.0 | -104.0 | mntH |
ttttcgtagtCATAATCCTGGTCTATCagagaaatca
|
2512802 | 2512818 | nd | [APIORCISFBSCS], , [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [IHBCE], , [SM] | [15], [26], [27] | |
OxyR | activator | mntHp | Sigma70, Sigma70 | -54.0 | -82.0 | mntH |
ctatcagagaAATCACCACAATCCATTtaaatgaatt
|
2512780 | 2512796 | nd | [AIBSCS], [CV(CHIP-SV/GEA/ROMA)], [CV(CHIP-SV/SM)], [CV(GEA/ROMA)], [CV(GEA/ROMA/SM)], [GEA], [SM] | [26], [27] | |
OxyR | repressor | oxyRp | Sigma38, Sigma70 | -18.0 | -51.0 | oxyR |
tgatagggatAATCGTTCATTGCTATTctacctatcg
|
4158431 | 4158447 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [3], [10], [12], [28] | |
OxyR | repressor | oxyRp | Sigma38, Sigma70 | 5.0 | -29.0 | oxyR |
ctattctaccTATCGCCATGAACTATCgtggcgatgg
|
4158453 | 4158469 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [3], [10], [12], [15], [28] | |
OxyR | activator | oxySp | Sigma70 | -67.0 | -67.0 | oxyS |
ccatcgccacGATAGTTCATGGCGATAggtagaatag
|
4158453 | 4158469 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [12], [15], [28] | |
OxyR | activator | oxySp | Sigma70 | -45.0 | -45.0 | oxyS |
cgataggtagAATAGCAATGAACGATTatccctatca
|
4158431 | 4158447 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [12], [28] | |
OxyR | activator | sufAp | Sigma70 | -232.0 | -264.0 | sufA, sufB, sufC, sufD, sufS, sufE |
tctgaacgctGCACTTTTTTACCTATCtcttaaatag
|
1764642 | 1764658 | nd | [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [15], [23], [29], [30], [31], [32] | |
OxyR | activator | sufAp | Sigma70 | -210.0 | -242.0 | sufA, sufB, sufC, sufD, sufS, sufE |
ctatctcttaAATAGTCATTTTCAATAcaactttttc
|
1764620 | 1764636 | nd | [BPP], [CV(CHIP-SV/SM)], [GEA], [SM] | [23], [29], [30], [31], [32] | |
OxyR | activator | trxCp | Sigma70 | -57.0 | -117.0 | trxC |
ccaaagcctgCGACTATCATACCTATTgaataaaaca
|
2718610 | 2718626 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [15], [33] | |
OxyR | activator | trxCp | Sigma70 | -35.0 | -95.0 | trxC |
ctattgaataAAACAGATTGTTGTCTGgaacaatgtc
|
2718632 | 2718648 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [33] | |
OxyR | activator | uofp | nd | -62.0 | -166.0 | uof, fur |
acgccgtattAATAGATAATGCCAATCaaaataattg
|
710883 | 710899 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [15], [34] | |
OxyR | activator | uofp | nd | -40.0 | -144.0 | uof, fur |
caatcaaaatAATTGCTACAAATTTGTaacttttgct
|
710861 | 710877 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [34] | |
OxyR | repressor | uxuAp | Sigma70 | -54.0 | -172.0 | uxuA, uxuB |
aaattcttgtGATGTGGTTAACCAATTtcagaattcg
|
4551456 | 4551472 | nd | [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] | [23] | |
OxyR | repressor | uxuAp | Sigma70 | -32.0 | -150.0 | uxuA, uxuB |
caatttcagaATTCGGGTTGACATGTCttaccaaaag
|
4551478 | 4551494 | nd | [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] | [23] | |
OxyR | repressor | ybjCp | Sigma70 | -72.0 | -93.0 | ybjC, nfsA, rimK, ybjN |
attcgctgaaAGTAGGTTTAACCTGTTgcattaattg
|
890812 | 890828 | nd | [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [23], [25] | |
OxyR | repressor | ybjCp | Sigma70 | -50.0 | -71.0 | ybjC, nfsA, rimK, ybjN |
ctgttgcattAATTGCTAAAAGCTATAactgttaaac
|
890834 | 890850 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [15], [23], [25] | |
OxyR | repressor | ychFp | Sigma70 | 9.5 | -61.5 | ychF |
aataggcaaaGTTATTTCCATTTCTGCaatctgttag
|
1257865 | 1257881 | nd | [APIORCISFBSCS], [BPP] | [35] | |
OxyR | repressor | ychFp | Sigma70 | 31.5 | -39.5 | ychF |
tctgcaatctGTTAGCAATAACAGGTTgattattaag
|
1257843 | 1257859 | nd | [APIORCISFBSCS], [BPP] | [35] | |
OxyR | activator | yhjAp | Sigma70 | -86.0 | -159.0 | ccp |
tgatctgggtAATAGGCACAGGCTATCttattgatag
|
3669339 | 3669355 | nd | [AIBSCS], [BPP], , [IHBCE], | [15], [36] | |
OxyR | activator | yhjAp | Sigma70 | -64.0 | -137.0 | ccp |
ctatcttattGATAGTTTATATTCATGtaattgattg
|
3669317 | 3669333 | nd | [APIORCISFBSCS], [BPP] | [36] | |
OxyR | activator | yjjZp | Sigma70 | -62.0 | -89.0 | yjjZ |
taatcatagcGATAGGTTTACCCGATAgcaagggatt
|
4605707 | 4605723 | nd | [APIORCISFBSCS], [BPP], , [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA], [IHBCE], | [13], [15] | |
OxyR | activator | zinTp | Sigma70 | 21.5 | -8.5 | zinT |
tatacattaaCTCTGGAGGAAACTGTTttggcgattc
|
2041358 | 2041374 | nd | , [IHBCE], | [15] | |
OxyR | activator | znuAp | Sigma38 | 55.5 | -23.5 | znuA |
atatcacactTCTCATATTCATTACGAttattggtcg
|
1942598 | 1942614 | nd | , [IHBCE], | [15] | |
OxyR | activator | znuCp | Sigma70 | -27.5 | -55.5 | znuC, znuB |
cgaccaataaTCGTAATGAATATGAGAagtgtgatat
|
1942598 | 1942614 | nd | , [IHBCE], | [15] |
Functional conformation | Function | Object name | Object type | Distance to first Gene | Sequence | LeftPos | RightPos | Center Position | Growth Condition | Evidence (Confirmed, Strong, Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
OxyR | activator | ahpC | gene | -324.5 |
gtcgagtaaaAGGCATAACCTATCACTGTcataggtaag
|
638611 | 638630 | 638620.5 | [1] | [15] | ||
OxyR | activator | ahpC | gene | -309.5 |
taacctatcaCTGTCATAGGTAAGAGCTTagatcaggtg
|
638626 | 638645 | 638635.5 | [1] | [15] | ||
OxyR | activator | ahpC | gene | -302.5 |
tcactgtcatAGGTAAGAGCTTAGATCAGgtgattgccc
|
638633 | 638652 | 638642.5 | [1] | [15] | ||
OxyR | activator | ahpC | gene | -86.5 |
gaaggttgtaAGGTAAAACTTATCGATTTgataatggaa
|
638849 | 638868 | 638858.5 | [1] | [15] | ||
OxyR | activator | ahpF | gene | 50.5 |
ggcttaccttGAGAAATTGACCAAGCCTGttgagttaat
|
639794 | 639813 | 639803.5 | [1] | [15] | ||
OxyR | activator | dps | gene | -86.5 |
tccgctattcTGGCTGTTCCTATCACACTaatagtggta
|
848988 | 849007 | 848997.5 | [1] | [15] | ||
OxyR | activator | dps | gene | -101.5 |
gttcctatcaCACTAATAGTGGTAACAAGcgtgaaaaac
|
849003 | 849022 | 849012.5 | [1] | [15] | ||
OxyR | activator | dps | gene | -143.5 |
actaataaagATTCAATGAGTTAGATATAttgataagaa
|
849045 | 849064 | 849054.5 | [1] | [15] | ||
OxyR | activator | dps | gene | -150.5 |
aagattcaatGAGTTAGATATATTGATAAgaacaattct
|
849052 | 849071 | 849061.5 | [1] | [15] | ||
OxyR | activator | grxA | gene | 0.5 |
ccaaaaataaCGGTTTGCATTATTTCTCTcctcatagat
|
890743 | 890762 | 890752.5 | [1] | [15] | ||
OxyR | repressor | ybjC | gene | -160.5 |
ccaaaaataaCGGTTTGCATTATTTCTCTcctcatagat
|
890743 | 890762 | 890752.5 | [1] | [15] | ||
OxyR | activator | grxA | gene | -70.5 |
cgctgaaagtAGGTTTAACCTGTTGCATTaattgctaaa
|
890814 | 890833 | 890823.5 | [1] | [15] | ||
OxyR | repressor | ybjC | gene | -89.5 |
cgctgaaagtAGGTTTAACCTGTTGCATTaattgctaaa
|
890814 | 890833 | 890823.5 | [1] | [15] | ||
OxyR | activator | grxA | gene | -85.5 |
taacctgttgCATTAATTGCTAAAAGCTAtaactgttaa
|
890829 | 890848 | 890838.5 | [1] | [15] | ||
OxyR | repressor | ybjC | gene | -74.5 |
taacctgttgCATTAATTGCTAAAAGCTAtaactgttaa
|
890829 | 890848 | 890838.5 | [1] | [15] | ||
OxyR | activator | grxA | gene | -92.5 |
ttgcattaatTGCTAAAAGCTATAACTGTtaaacacaat
|
890836 | 890855 | 890845.5 | [1] | [15] | ||
OxyR | repressor | ybjC | gene | -67.5 |
ttgcattaatTGCTAAAAGCTATAACTGTtaaacacaat
|
890836 | 890855 | 890845.5 | [1] | [15] | ||
OxyR | activator | grxA | gene | -98.5 |
ttaattgctaAAAGCTATAACTGTTAAACAcaatacagtg
|
890842 | 890861 | 890851.5 | [1] | [15] | ||
OxyR | repressor | ybjC | gene | -61.5 |
ttaattgctaAAAGCTATAACTGTTAAACAcaatacagtg
|
890842 | 890861 | 890851.5 | [1] | [15] | ||
OxyR | activator | grxA | gene | -101.5 |
ttgctaaaagCTATAACTGTTAAACACAAtacagtgaaa
|
890845 | 890864 | 890854.5 | [1] | [15] | ||
OxyR | repressor | ybjC | gene | -58.5 |
ttgctaaaagCTATAACTGTTAAACACAAtacagtgaaa
|
890845 | 890864 | 890854.5 | [1] | [15] | ||
OxyR | repressor | mdtK | gene | 84.5 |
atcgcccaaaCTGCGATGGGTTTTGTCGAtaccgtgatg
|
1743532 | 1743551 | 1743541.5 | [1] | [15] | ||
OxyR | activator | sufB | gene | 24.5 |
gtccaggtttTGACATCGTCAGTTGCTTCagtattacga
|
1763975 | 1763994 | 1763984.5 | [1] | [15] | ||
OxyR | activator | sufA | gene | -51.5 |
aacagcatgtTAGTGATAATGATTATCAGttcaacccag
|
1764428 | 1764447 | 1764437.5 | [1] | [15] | ||
OxyR | repressor | flu | gene | -230.5 |
tgcaatagctCAATAATAGAATAAAACGAtcaatatcta
|
2071299 | 2071318 | 2071308.5 | [1] | [15] | ||
OxyR | repressor | flu | gene | -223.5 |
gctcaataatAGAATAAAACGATCAATATctattttatc
|
2071306 | 2071325 | 2071315.5 | [1] | [15] | ||
OxyR | repressor | flu | gene | -204.5 |
cgatcaatatCTATTTTATCGATCGTTTAtatcgatcga
|
2071325 | 2071344 | 2071334.5 | [1] | [15] | ||
OxyR | repressor | flu | gene | -198.5 |
atatctatttTATCGATCGTTTATATCGAtcgataagct
|
2071331 | 2071350 | 2071340.5 | [1] | [15] | ||
OxyR | repressor | flu | gene | -191.5 |
ttttatcgatCGTTTATATCGATCGATAAgctaataata
|
2071338 | 2071357 | 2071347.5 | [1] | [15] | ||
OxyR | activator | mntH | gene | 90.5 |
ttaccgggatCGATATAACCAATCGCCGCaatgaacgca
|
2512606 | 2512625 | 2512615.5 | [1] | [15] | ||
OxyR | activator | mntH | gene | -85.5 |
tcatttaaatGGATTGTGGTGATTTCTCTgatagaccag
|
2512782 | 2512801 | 2512791.5 | [1] | [15] | ||
OxyR | activator | mntH | gene | -107.5 |
tttctctgatAGACCAGGATTATGACTACgaaaagattg
|
2512804 | 2512823 | 2512813.5 | [1] | [15] | ||
OxyR | activator | trxC | gene | -122.5 |
ttcgtaccaaAGCCTGCGACTATCATACCtattgaataa
|
2718603 | 2718622 | 2718612.5 | [1] | [15] | ||
OxyR | activator | trxC | gene | -113.5 |
aagcctgcgaCTATCATACCTATTGAATAaaacagattg
|
2718612 | 2718631 | 2718621.5 | [1] | [15] | ||
OxyR | repressor | ribB | gene | -324.5 |
tctggtttatGACTTACCCTTATCGCACTacaatggcac
|
3184781 | 3184800 | 3184790.5 | [1] | [15] | ||
OxyR | repressor | yidD | gene | -336.5 |
gaccgtttctAAGTAATAAAGCTAACCCCtgagtggtta
|
3884470 | 3884489 | 3884479.5 | [1] | [15] | ||
OxyR | activator | metE | gene | -237.5 |
aggtgttttaCTTCGATCATGAAAGTCCTtcacttcggc
|
4012806 | 4012825 | 4012815.5 | [1] | [15] | ||
OxyR | activator | metR | gene | 0.5 |
aggtgttttaCTTCGATCATGAAAGTCCTtcacttcggc
|
4012806 | 4012825 | 4012815.5 | [1] | [15] | ||
OxyR | activator | oxyR | gene | -63.5 |
cagtcagaatGCTTGATAGGGATAATCGTtcattgctat
|
4158417 | 4158436 | 4158426.5 | [1] | [15] | ||
OxyR | activator | oxyR | gene | -54.5 |
tgcttgatagGGATAATCGTTCATTGCTAttctacctat
|
4158426 | 4158445 | 4158435.5 | [1] | [15] | ||
OxyR | activator | oxyR | gene | -25.5 |
ttctacctatCGCCATGAACTATCGTGGCgatggaggat
|
4158455 | 4158474 | 4158464.5 | [1] | [15] | ||
OxyR | repressor | rdcA | gene | -75.5 |
ttatttcttgCAGTAATTATAAAAGCCGAaaacagaact
|
4327050 | 4327069 | 4327059.5 | [1] | [15] | ||
OxyR | repressor | fimB | gene | -269.5 |
catgatatatAGATAAGATTAGTTGCATTaatgatgagg
|
4540678 | 4540697 | 4540687.5 | [1] | [15] | ||
OxyR | activator | yjjZ | gene | -370.5 |
catcggttggTTGCGATAGATATGATCGGaatagaccgc
|
4605424 | 4605443 | 4605433.5 | [1] | [15] | ||
OxyR | activator | yjjZ | gene | -92.5 |
ttgctaatcaTAGCGATAGGTTTACCCGAtagcaaggga
|
4605702 | 4605721 | 4605711.5 | [1] | [15] | ||
OxyR | activator | yjjZ | gene | -29.5 |
aattatcataTGATATTGGTTATCATTATcaatgaaaga
|
4605765 | 4605784 | 4605774.5 | [1] | [15] | ||
OxyR | activator | yjjZ | gene | -23.5 |
catatgatatTGGTTATCATTATCAATGAaagagatgaa
|
4605771 | 4605790 | 4605780.5 | [1] | [15] | ||
OxyR | activator | yjjZ | gene | -8.5 |
atcattatcaATGAAAGAGATGAAATCATgttgcaacgt
|
4605786 | 4605805 | 4605795.5 | [1] | [15] |
Growth Condition |
![]() |
---|
| C: Escherichia coli str. K-12 substr. MG1655| wild type| M9 minimal medium| paraquat 0.25 mM; glucose 0.2%| mid exponential phase |
Alignment and PSSM for OxyR TFBSs | ![]() |
---|
Aligned TFBS of OxyR |
---|
Sequence | |
---|---|
AAAGGCATAACCTATCACTG | |
ATCGGGTAAACCTATCGCTA | |
GTAGGTTTAACCTGTTGCAT | |
ATTGCTAAAAGCTATAACTG | |
ATTGGCATTATCTATTAATA | |
ATTGGTTATCATTATCAATG | |
TAAGCTCTTACCTATGACAG | |
TAAGGTAAAACTTATCGATT | |
TAAGATCTCAACTATCGCAT | |
ATCGATATAAACGATCGATA | |
ATCGCCATGAACTATCGTGG | |
ATAGAATAAAACGATCAATA | |
ATGAATATAAACTATCAATA | |
ATAGCCTGTGCCTATTACCC | |
TCTGATTTGACCTCTCACAG | |
TCTGGCTGTTCCTATCACAC | |
ATTGAAAATGACTATTTAAG | |
ATGTGGTTAACCAATTTCAG | |
ATAGCAATGAACGATTATCC | |
GCTTGTTACCACTATTAGTG | |
ATTAGCAATCATTATCATTT | |
ATAGACCAGGATTATGACTA | |
ATGCGTTTCCATTATCAAAT | |
TTCGGCATGAATAATTTGCG | |
CACTTTTTTACCTATCTCTT | |
GACTATCATACCTATTGAAT | |
CATGATTTCATCTCTTTCAT | |
ATGGATTGTGGTGATTTCTC | |
TTCGGGTTGACATGTCTTAC | |
GTGGATTAATTCAATTATAA | |
TTAGCAATAACAGGTTGATT | |
CAGGCATAAATCTATGAGGA | |
TCTGGAGGAAACTGTTTTGG | |
GGAAGAAGAACTAATTGCTG | |
AATCGTAATGAATATGAGAA | |
TGAGGAATATACAGTAACCG | |
GTTCCAGACAACAATCTGTT | |
CAAAGTTATTTCCATTTCTG | |
TAACGGTAACACTGTAGAGG | |
CAAATTTGTAGCAATTATTT | |
TATAGCACCGGCTATGTGTT | |
TCTTGTCCGTGCAATAGCTC |
Position weight matrix (PWM). OxyR matrix-quality result |
---|
A 18 13 15 6 11 9 16 16 16 26 18 3 8 34 0 4 20 11 13 9 C 5 5 7 4 8 9 5 2 6 5 14 31 1 2 0 16 0 18 4 6 G 6 2 6 27 21 4 2 6 7 6 5 0 5 6 0 5 11 6 4 15 T 13 22 14 5 2 20 19 18 13 5 5 8 28 0 42 17 11 7 21 12 |
Consensus |
---|
; consensus.strict ataGgtttaacCtATcactg ; consensus.strict.rc CAGTGATAGGTTAAACCTAT ; consensus.IUPAC wwwGgywwwamCtATyrcwg ; consensus.IUPAC.rc CWGYRATAGKTWWWRCCWWW ; consensus.regexp [at][at][at]Gg[ct][at][at][at]a[ac]CtAT[ct][ag]c[at]g ; consensus.regexp.rc C[AT]G[CT][AG]ATAG[GT]T[AT][AT][AT][AG]CC[AT][AT][AT] |
Evolutionary conservation of regulatory elements | ![]() |
---|
Reference(s) |
![]() |
---|---|