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Synonyms: GadW |
Summary:
The transcription factor GadW, for "Glutamic acid decarboxylase," is negatively autoregulated and controls the transcription of the genes involved in the principal acid resistance system, is glutamate dependent (GAD), and is also referred to as the GAD system [1, 2, 3, 4, 5] In addition, GadW also activates the transcription of the central activator involved in the acid response [4] The physiological inducer is unknown. Richard et al. proposed that GadW can sense intracellular Na+ concentrations, but the mechanism is not known [7] GadW is one of the regulators in the acid resistance system and is encoded by the unusual gadXW operon, which is located in the region called the acid fitness island [5] This operon encodes two transcriptional regulators, GadX and GadW, both of which are members of the AraC/XylS family of transcriptional regulators [5, 8, 9] The activities of GadW and GadX are indispensable upon entry into the stationary phase in response to acid pH [1, 10] In addition, Tramonti et al. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | AraC/XylS | ||||||||||||||
TFBs length: | 20 | ||||||||||||||
TFBs symmetry: | asymmetric | ||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||
Gene name: | gadW | ||||||||||||||
Genome position: | 3663890-3664618 | ||||||||||||||
Length: | 729 bp / 242 aa | ||||||||||||||
Operon name: | gadAXW | ||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | dctR, gadA, gadB, gadC, gadE, gadF, gadW, gadX, gadY, hdeA, hdeB, mdtE, mdtF, slp, yhiD | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
pH (6)
Transcription related (3)
membrane (2)
activator (2)
drug resistance/sensitivity (2)
Read more >
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Regulated operon(s) | gadAXW, gadBC, gadEF-mdtEF, gadY, hdeAB-yhiD, slp-dctR | ||||||
First gene in the operon(s) | gadA, gadB, gadE, gadW, gadX, gadY, hdeA, slp | ||||||
Simple and complex regulons | AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR,ppGpp AdiY,CRP,Fis,FliZ,GadE,GadW,GadX,RcsB CRP,EvgA,FliZ,GadE,GadW,GadX,H-NS,YdeO FNR,GadE,GadW,GadX,H-NS,PhoB,RutR Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence![]() |
LeftPos | RightPos | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | References | |
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GadW | activator | gadAp | Sigma70 | -121.5 | -148.5 | gadA, gadX |
tacgataataAAGTCTGTTTTTAATATTATcatgttaaat
|
3667719 | 3667738 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadAp | Sigma70 | -121.5 | -148.5 | gadA, gadX |
tacgataataAAGTCTGTTTTTAATATTATcatgttaaat
|
3667719 | 3667738 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadAp | Sigma70 | -100.5 | -127.5 | gadA, gadX |
taatattatcATGTTAAATGTTTATATTATaaaaagtcgt
|
3667698 | 3667717 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadAp | Sigma70 | -100.5 | -127.5 | gadA, gadX |
taatattatcATGTTAAATGTTTATATTATaaaaagtcgt
|
3667698 | 3667717 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadAp | Sigma70 | -78.0 | -105.0 | gadA, gadX |
tatattataaAAAGTCGTTTTTCTGCTTAGgattttgtta
|
3667676 | 3667695 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | repressor | gadAp | Sigma70 | -78.0 | -105.0 | gadA, gadX |
tatattataaAAAGTCGTTTTTCTGCTTAGgattttgtta
|
3667676 | 3667695 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | activator | gadAp | Sigma70 | -57.5 | -84.5 | gadA, gadX |
tctgcttaggATTTTGTTATTTAAATTAAGcctgtaatgc
|
3667655 | 3667674 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | repressor | gadAp | Sigma70 | -57.5 | -84.5 | gadA, gadX |
tctgcttaggATTTTGTTATTTAAATTAAGcctgtaatgc
|
3667655 | 3667674 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | activator | gadAp2 | Sigma38 | -121.5 | -148.5 | gadA, gadX |
tacgataataAAGTCTGTTTTTAATATTATcatgttaaat
|
3667719 | 3667738 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadAp2 | Sigma38 | -121.5 | -148.5 | gadA, gadX |
tacgataataAAGTCTGTTTTTAATATTATcatgttaaat
|
3667719 | 3667738 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadAp2 | Sigma38 | -100.5 | -127.5 | gadA, gadX |
taatattatcATGTTAAATGTTTATATTATaaaaagtcgt
|
3667698 | 3667717 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadAp2 | Sigma38 | -100.5 | -127.5 | gadA, gadX |
taatattatcATGTTAAATGTTTATATTATaaaaagtcgt
|
3667698 | 3667717 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadAp2 | Sigma38 | -78.0 | -105.0 | gadA, gadX |
tatattataaAAAGTCGTTTTTCTGCTTAGgattttgtta
|
3667676 | 3667695 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | repressor | gadAp2 | Sigma38 | -78.0 | -105.0 | gadA, gadX |
tatattataaAAAGTCGTTTTTCTGCTTAGgattttgtta
|
3667676 | 3667695 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | activator | gadAp2 | Sigma38 | -57.5 | -84.5 | gadA, gadX |
tctgcttaggATTTTGTTATTTAAATTAAGcctgtaatgc
|
3667655 | 3667674 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | repressor | gadAp2 | Sigma38 | -57.5 | -84.5 | gadA, gadX |
tctgcttaggATTTTGTTATTTAAATTAAGcctgtaatgc
|
3667655 | 3667674 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] | |
GadW | activator | gadBp | Sigma70 | -231.5 | -258.5 | gadB, gadC |
ataataatcaAGTACTAATAGTGATATTTTaaggtctgat
|
1572294 | 1572313 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp | Sigma70 | -231.5 | -258.5 | gadB, gadC |
ataataatcaAGTACTAATAGTGATATTTTaaggtctgat
|
1572294 | 1572313 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadBp | Sigma70 | -210.5 | -237.5 | gadB, gadC |
tgatattttaAGGTCTGATTTTTACGTGATaattcaggag
|
1572273 | 1572292 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp | Sigma70 | -210.5 | -237.5 | gadB, gadC |
tgatattttaAGGTCTGATTTTTACGTGATaattcaggag
|
1572273 | 1572292 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadBp | Sigma70 | -119.5 | -146.5 | gadB, gadC |
gaatttcataTTGTATTGTTTTTCAATGAAaaaatattat
|
1572182 | 1572201 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp | Sigma70 | -119.5 | -146.5 | gadB, gadC |
gaatttcataTTGTATTGTTTTTCAATGAAaaaatattat
|
1572182 | 1572201 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadBp | Sigma70 | -98.5 | -125.5 | gadB, gadC |
ttcaatgaaaAAATATTATTCGCGTAATATctcacgataa
|
1572161 | 1572180 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp | Sigma70 | -98.5 | -125.5 | gadB, gadC |
ttcaatgaaaAAATATTATTCGCGTAATATctcacgataa
|
1572161 | 1572180 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadBp2 | Sigma38 | -231.5 | -258.5 | gadB, gadC |
ataataatcaAGTACTAATAGTGATATTTTaaggtctgat
|
1572294 | 1572313 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp2 | Sigma38 | -231.5 | -258.5 | gadB, gadC |
ataataatcaAGTACTAATAGTGATATTTTaaggtctgat
|
1572294 | 1572313 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadBp2 | Sigma38 | -210.5 | -237.5 | gadB, gadC |
tgatattttaAGGTCTGATTTTTACGTGATaattcaggag
|
1572273 | 1572292 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp2 | Sigma38 | -210.5 | -237.5 | gadB, gadC |
tgatattttaAGGTCTGATTTTTACGTGATaattcaggag
|
1572273 | 1572292 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadBp2 | Sigma38 | -119.5 | -146.5 | gadB, gadC |
gaatttcataTTGTATTGTTTTTCAATGAAaaaatattat
|
1572182 | 1572201 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp2 | Sigma38 | -119.5 | -146.5 | gadB, gadC |
gaatttcataTTGTATTGTTTTTCAATGAAaaaatattat
|
1572182 | 1572201 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadBp2 | Sigma38 | -98.5 | -125.5 | gadB, gadC |
ttcaatgaaaAAATATTATTCGCGTAATATctcacgataa
|
1572161 | 1572180 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | repressor | gadBp2 | Sigma38 | -98.5 | -125.5 | gadB, gadC |
ttcaatgaaaAAATATTATTCGCGTAATATctcacgataa
|
1572161 | 1572180 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2], [3] | |
GadW | activator | gadEp2 | Sigma38 | -595.5 | -616.5 | gadE, gadF, mdtE, mdtF |
ctatggcaaaTTAGCCATTTCAAACATTATcatggctgat
|
3657740 | 3657759 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [4], [5] | |
GadW | activator | gadEp2 | Sigma38 | -574.5 | -595.5 | gadE, gadF, mdtE, mdtF |
aaacattatcATGGCTGATATTTTCCGTAGtcaggtttaa
|
3657761 | 3657780 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [4], [5] | |
GadW | repressor | gadWp2 | nd | -53.5 | -216.5 | gadW |
ataacttttaCTGGAAATAAGATCAGCCATttttttataa
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3664825 | 3664844 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [5] | |
GadW | repressor | gadWp2 | nd | -32.5 | -195.5 | gadW |
atcagccattTTTTTATAAACATAAGCTATacgctgtgcg
|
3664804 | 3664823 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [5] | |
GadW | repressor | gadXp | Sigma38 | nd | nd | gadX, gadW | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] | ||
GadW | repressor | gadYp | Sigma38 | -50.5 | -50.5 | gadY |
cgcacagcgtATAGCTTATGTTTATAAAAAaatggctgat
|
3664804 | 3664823 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [5] | |
GadW | repressor | gadYp | Sigma38 | -29.5 | -29.5 | gadY |
ttataaaaaaATGGCTGATCTTATTTCCAGtaaaagttat
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3664825 | 3664844 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [5] | |
GadW | activator | hdeAp | Sigma70 | -126.5 | -177.5 | hdeA, hdeB, yhiD |
gcgtctaagaATGCAGTCGATTTAATAAAAatttcctaat
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3656908 | 3656927 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [3], [6] | |
GadW | repressor | hdeAp | Sigma70 | -126.5 | -177.5 | hdeA, hdeB, yhiD |
gcgtctaagaATGCAGTCGATTTAATAAAAatttcctaat
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3656908 | 3656927 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [3], [6] | |
GadW | activator | hdeAp | Sigma70 | -74.5 | -125.5 | hdeA, hdeB, yhiD |
tgcatctgtaACTCATTGTATTGAAATAAAaatatctgat
|
3656856 | 3656875 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | repressor | hdeAp | Sigma70 | -74.5 | -125.5 | hdeA, hdeB, yhiD |
tgcatctgtaACTCATTGTATTGAAATAAAaatatctgat
|
3656856 | 3656875 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | activator | hdeAp | Sigma70 | -53.5 | -104.5 | hdeA, hdeB, yhiD |
tgaaataaaaATATCTGATTTTGATATTTTccatcaacat
|
3656835 | 3656854 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | repressor | hdeAp | Sigma70 | -53.5 | -104.5 | hdeA, hdeB, yhiD |
tgaaataaaaATATCTGATTTTGATATTTTccatcaacat
|
3656835 | 3656854 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | activator | hdeAp2 | Sigma38 | -126.5 | -177.5 | hdeA, hdeB, yhiD |
gcgtctaagaATGCAGTCGATTTAATAAAAatttcctaat
|
3656908 | 3656927 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [3], [6] | |
GadW | repressor | hdeAp2 | Sigma38 | -126.5 | -177.5 | hdeA, hdeB, yhiD |
gcgtctaagaATGCAGTCGATTTAATAAAAatttcctaat
|
3656908 | 3656927 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [3], [6] | |
GadW | activator | hdeAp2 | Sigma38 | -74.5 | -125.5 | hdeA, hdeB, yhiD |
tgcatctgtaACTCATTGTATTGAAATAAAaatatctgat
|
3656856 | 3656875 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | repressor | hdeAp2 | Sigma38 | -74.5 | -125.5 | hdeA, hdeB, yhiD |
tgcatctgtaACTCATTGTATTGAAATAAAaatatctgat
|
3656856 | 3656875 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | activator | hdeAp2 | Sigma38 | -53.5 | -104.5 | hdeA, hdeB, yhiD |
tgaaataaaaATATCTGATTTTGATATTTTccatcaacat
|
3656835 | 3656854 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | repressor | hdeAp2 | Sigma38 | -53.5 | -104.5 | hdeA, hdeB, yhiD |
tgaaataaaaATATCTGATTTTGATATTTTccatcaacat
|
3656835 | 3656854 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3], [5], [6] | |
GadW | repressor | slpp | Sigma70 | -81.5 | -106.5 | slp, dctR |
ctaaacagaaAGGATATAAACATCAGACAGgtttacgtta
|
3653845 | 3653864 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [3] | |
GadW | repressor | slpp | Sigma70 | -60.5 | -85.5 | slp, dctR |
atcagacaggTTTACGTTACTATCAGGCATatcacctcag
|
3653866 | 3653885 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [3], [5] |
Alignment and PSSM for GadW TFBSs | ![]() |
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Aligned TFBS of GadW |
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Sequence | |
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TCACGTAAAAATCAGACCTTA | |
TAATATTAAAAACAGACTTTA | |
AAATATCAAAATCAGATATTT | |
TTACGTTACTATCAGGCATAT | |
GGATATAAACATCAGACAGGT | |
TAATATAAACATTTAACATGA | |
TTTTATAAACATAAGCTATAC | |
TACGGAAAATATCAGCCATGA | |
TGGAAATAAGATCAGCCATTT | |
TTATTTCAATACAATGAGTTA | |
TCATTGAAAAACAATACAATA | |
TGTTATTTAAATTAAGCCTGT | |
AAATATCACTATTAGTACTTG | |
AATTAGCCATTTCAAACATTA | |
TTTATTAAATCGACTGCATTC | |
CTAAGCAGAAAAACGACTTTT | |
TTACGCGAATAATATTTTTTC |
Position weight matrix (PWM). GadW matrix-quality result |
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A 3 6 11 3 9 2 8 14 15 6 15 3 5 14 3 8 2 10 1 2 7 C 1 2 1 3 0 2 4 1 2 3 1 2 8 2 0 3 12 3 0 0 3 G 1 3 1 1 5 2 1 1 0 1 0 1 0 0 10 4 0 1 1 4 1 T 12 6 4 10 3 11 4 1 0 7 1 11 4 1 4 2 3 3 15 11 6 |
Consensus |
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; consensus.strict taatataAAtAtcAGaCaTta ; consensus.strict.rc TAATGTCTGATATTTATATTA ; consensus.IUPAC twatrtmAAwAtmAGrCaTkw ; consensus.IUPAC.rc WMATGYCTKATWTTKAYATWA ; consensus.regexp t[at]at[ag]t[ac]AA[at]At[ac]AG[ag]CaT[gt][at] ; consensus.regexp.rc [AT][AC]ATG[CT]CT[GT]AT[AT]TT[GT]A[CT]AT[AT]A |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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