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Synonyms: NarL, NarL-Phosphorylated |
Summary:
NarL, "nitrate/nitrite response regulator NarL," is a transcriptional dual regulator of many anaerobic electron transport and fermentation-related genes in the response to the availability of high concentrations of nitrate or nitrite [49]. NarL activates expression of 51 operons in response to nitrate, mostly genes needed for nitrate respiration. NarL represses 41 operons involved in alternative respiratory pathways, such as fumarate reduction or fermentation of simple sugars [50]. The response regulator NarL belongs to the LuxR/UhpA family [] and is part of the two-component system NarX-NarL. There is intensive cross-regulation with the paralogous two-component system NarQ-NarP [19]. Each of the sensors, NarX and NarQ, is able to phosphorylate NarL and NarP, leading to the activation of both proteins. In the absence of nitrate and nitrite, NarX and NarQ stimulate the dephosphorylation of NarL-P and NarP-P []. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | LuxR/UhpA | ||||||||||||||||||
Sensing class: | External-Two-component systems | ||||||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||||||
Gene name: | narL | ||||||||||||||||||
Genome position: | 1275179-1275829 | ||||||||||||||||||
Length: | 651 bp / 216 aa | ||||||||||||||||||
Operon name: | narXL | ||||||||||||||||||
TU(s) encoding the TF: |
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Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence (Confirmed, Strong, Weak) | References | |
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NarL-Phosphorylated | repressor | adhEp1 | Sigma38, Sigma70 | 81.0 | -212.0 | adhE |
gatcacgtaaTCAGTACCCAGAAGTGagtaatcttg
|
1298325 | 1298340 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [8], [9] | |
NarL-Phosphorylated | repressor | adhEp1 | Sigma38, Sigma70 | 90.0 | -203.0 | adhE |
atcagtacccAGAAGTGAGTAATCTTgcttacgcca
|
1298316 | 1298331 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [8], [9] | |
NarL-Phosphorylated | repressor | adhEp2 | Sigma38 | -24.0 | -212.0 | adhE |
gatcacgtaaTCAGTACCCAGAAGTGagtaatcttg
|
1298325 | 1298340 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [9] | |
NarL-Phosphorylated | repressor | adhEp2 | Sigma38 | -15.0 | -203.0 | adhE |
atcagtacccAGAAGTGAGTAATCTTgcttacgcca
|
1298316 | 1298331 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [9] | |
NarL-Phosphorylated | repressor | aspAp | Sigma70 | -112.0 | -217.0 | aspA, dcuA |
gcgcaactatTTTTGGTAGTAATCCCaaagcggtga
|
4368536 | 4368551 | [BPP], [GEA] | [2] | |
NarL-Phosphorylated | repressor | aspAp | Sigma70 | -76.0 | -181.0 | aspA, dcuA |
tctatttcacAAATTAATAATTAAGGggtaaaaacc
|
4368500 | 4368515 | [BPP], [GEA] | [2] | |
NarL-Phosphorylated | repressor | aspAp | Sigma70 | -67.0 | -172.0 | aspA, dcuA |
caaattaataATTAAGGGGTAAAAACcgacacttaa
|
4368491 | 4368506 | [BPP], [GEA] | [2] | |
NarL-Phosphorylated | repressor | caiFp | Sigma70 | nd | nd | caiF | nd | nd | [GEA] | [10] | ||
NarL-Phosphorylated | repressor | citCp2 | nd | 37.0 | -147.0 | citC, citD, citE, citF, citX, citG |
tcacgccgaaATACTCCTtaggatgtat
|
652000 | 652007 | [AIBSCS] | [11] | |
NarL-Phosphorylated | activator | cydDp | Sigma70 | -126.0 | -195.0 | cydD, cydC |
tatcgccaggCCATTACTTCGGCCGGtacaggctgc
|
931149 | 931164 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [12] | |
NarL-Phosphorylated | activator | cydDp | Sigma70 | -80.0 | -149.0 | cydD, cydC |
ttgatgcggaACGCTACCTCGATGGTttagctgacg
|
931103 | 931118 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [12] | |
NarL-Phosphorylated | repressor | dcuBp | Sigma70 | -109.0 | -129.0 | dcuB, fumB |
gccaatattcACTGTGAGGTATTTGCtaaagccggt
|
4348865 | 4348880 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [13] | |
NarL-Phosphorylated | repressor | dcuBp | Sigma70 | -45.0 | -65.0 | dcuB, fumB |
ctgaaaacagTTCATACAAAACAGAAcgtgactgtg
|
4348801 | 4348816 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [13] | |
NarL-Phosphorylated | repressor | dcuBp | Sigma70 | 2.0 | -19.0 | dcuB, fumB |
caaaaatttaAATAGGATTATCGCGAgggttcacac
|
4348755 | 4348770 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [13] | |
NarL-Phosphorylated | repressor | dcuBp | Sigma70 | 19.0 | -2.0 | dcuB, fumB |
ttatcgcgagGGTTCACACATGTTATttactatcca
|
4348738 | 4348753 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [13] | |
NarL-Phosphorylated | repressor | dcuBp | Sigma70 | 24.0 | 4.0 | dcuB, fumB |
gcgagggttcACACATGTTATTTACTatccaactta
|
4348733 | 4348748 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [13] | |
NarL-Phosphorylated | repressor | dcuBp | Sigma70 | 43.0 | 23.0 | dcuB, fumB |
atttactatcCAACTTATCATAATACtgatatgtct
|
4348714 | 4348729 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [13] | |
NarL-Phosphorylated | repressor | dcuSp | Sigma70 | -40.0 | -63.0 | dcuS, dcuR |
tagccaatcaTTCTTACTCCCTTTGAattacccgcc
|
4351717 | 4351732 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2] | |
NarL-Phosphorylated | repressor | dcuSp | Sigma70 | -31.0 | -54.0 | dcuS, dcuR |
attcttactcCCTTTGAATTACCCGCctcatcagag
|
4351708 | 4351723 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2] | |
NarL-Phosphorylated | repressor | dmsAp1 | Sigma70 | -27.0 | -163.0 | dmsA, dmsB, dmsC |
ataccgaacaATAATTACTCCTCACTtacacgtaat
|
940788 | 940803 | [BCE], [BPP] | [14], [15] | |
NarL-Phosphorylated | repressor | dmsAp1 | Sigma70 | -7.0 | -143.0 | dmsA, dmsB, dmsC |
ctcacttacaCGTAATACTACTTTCGagtgaaaatc
|
940808 | 940823 | [BCE], [BPP] | [14], [15] | |
NarL-Phosphorylated | repressor | dmsAp1 | Sigma70 | 15.0 | -122.0 | dmsA, dmsB, dmsC |
tttcgagtgaAAATCTACCTATCTCTttgattttca
|
940829 | 940844 | [APIORCISFBSCS], [BPP] | [14], [15] | |
NarL-Phosphorylated | repressor | dpiBp | nd | 20.0 | -232.0 | dpiB, dpiA |
atacatcctaAGGAGTATttcggcgtga
|
652000 | 652007 | [AIBSCS] | [11] | |
NarL-Phosphorylated | repressor | dpiBp2 | nd | 25.0 | -39.0 | dpiB, dpiA |
acattttaatTACATCCGtcaaagaggc
|
652193 | 652200 | [AIBSCS] | [11] | |
NarL-Phosphorylated | repressor | fdhFp | Sigma54 | nd | nd | fdhF | nd | nd | [BPP], [GEA] | [16] | ||
NarL-Phosphorylated | activator | fdnGp | Sigma70 | -124.0 | -153.0 | fdnG, fdnH, fdnI |
actggcctgtCAGGCAGTGGTGCGTTtttctaccgc
|
1547240 | 1547255 | [APIORCISFBSCS], [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [5], [16], [17], [18], [19] | |
NarL-Phosphorylated | activator | fdnGp | Sigma70 | -109.0 | -138.0 | fdnG, fdnH, fdnI |
agtggtgcgtTTTTCTACCGCTATTGaggtaggtca
|
1547255 | 1547270 | [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [16], [20] | |
NarL-Phosphorylated | activator | fdnGp | Sigma70 | -100.0 | -129.0 | fdnG, fdnH, fdnI |
tttttctaccGCTATTGAGGTAGGTCaatttgcgaa
|
1547264 | 1547279 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [16], [17], [18], [19] | |
NarL-Phosphorylated | activator | fdnGp | Sigma70 | -77.0 | -106.0 | fdnG, fdnH, fdnI |
gtcaatttgcGAAGGCGGATTATTTTgtggcaaaca
|
1547287 | 1547302 | [APIORCISFBSCS], [BCE], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [16], [17], [18], [19] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -348.0 | -375.0 | focA, pflB |
acgcaatgtaGGCTTAATGATTAGTCtgagttatat
|
954833 | 954848 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -346.0 | -373.0 | focA, pflB |
gcaatgtaggCTTAATGATTAGTCTGagttatatta
|
954831 | 954846 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -286.0 | -313.0 | focA, pflB |
tttacatataTTTGCATTAATAAAATaattgtaatt
|
954771 | 954786 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -270.0 | -297.0 | focA, pflB |
ttaataaaatAATTGTAATTATAAGGttaaatatcg
|
954755 | 954770 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -253.0 | -280.0 | focA, pflB |
attataaggtTAAATATCGGTAATTTgtatttaata
|
954738 | 954753 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -235.0 | -262.0 | focA, pflB |
ggtaatttgtATTTAATAAATACGATcgatattgtt
|
954720 | 954735 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -226.0 | -253.0 | focA, pflB |
tatttaataaATACGATCGATATTGTtactttattc
|
954711 | 954726 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -152.0 | -179.0 | focA, pflB |
atgcggaaaaAATTCAACTCATTTGTtaatttttaa
|
954637 | 954652 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -101.0 | -128.0 | focA, pflB |
ggataatcaaATATTTACTCCGTATTtgcataaaaa
|
954586 | 954601 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -37.0 | -64.0 | focA, pflB |
gcgagatatgATCTATATCAATTTCTcatctataat
|
954522 | 954537 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp1 | Sigma70 | -20.0 | -47.0 | focA, pflB |
tcaatttctcATCTATAATGCTTTGTtagtatctcg
|
954505 | 954520 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | -27.0 | -375.0 | focA, pflB |
acgcaatgtaGGCTTAATGATTAGTCtgagttatat
|
954833 | 954848 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | -25.0 | -373.0 | focA, pflB |
gcaatgtaggCTTAATGATTAGTCTGagttatatta
|
954831 | 954846 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 36.0 | -313.0 | focA, pflB |
tttacatataTTTGCATTAATAAAATaattgtaatt
|
954771 | 954786 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 52.0 | -297.0 | focA, pflB |
ttaataaaatAATTGTAATTATAAGGttaaatatcg
|
954755 | 954770 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 69.0 | -280.0 | focA, pflB |
attataaggtTAAATATCGGTAATTTgtatttaata
|
954738 | 954753 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 87.0 | -262.0 | focA, pflB |
ggtaatttgtATTTAATAAATACGATcgatattgtt
|
954720 | 954735 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 96.0 | -253.0 | focA, pflB |
tatttaataaATACGATCGATATTGTtactttattc
|
954711 | 954726 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 170.0 | -179.0 | focA, pflB |
atgcggaaaaAATTCAACTCATTTGTtaatttttaa
|
954637 | 954652 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 221.0 | -128.0 | focA, pflB |
ggataatcaaATATTTACTCCGTATTtgcataaaaa
|
954586 | 954601 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 285.0 | -64.0 | focA, pflB |
gcgagatatgATCTATATCAATTTCTcatctataat
|
954522 | 954537 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | focAp3 | Sigma70 | 302.0 | -47.0 | focA, pflB |
tcaatttctcATCTATAATGCTTTGTtagtatctcg
|
954505 | 954520 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] | |
NarL-Phosphorylated | repressor | frdAp | Sigma70, Sigma38 | -26.0 | -120.0 | frdA, frdB, frdC, frdD |
tcaaatttcaGACTTATCCATCAGACtatactgttg
|
4382430 | 4382445 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | repressor | frdAp | Sigma70, Sigma38 | -12.0 | -106.0 | frdA, frdB, frdC, frdD |
tatccatcagACTATACTGTTGTACCtataaaggag
|
4382416 | 4382431 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | repressor | frdAp | Sigma70, Sigma38 | -4.0 | -98.0 | frdA, frdB, frdC, frdD |
agactatactGTTGTACCTATAAAGGagcagtggaa
|
4382408 | 4382423 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | repressor | frdAp | Sigma70, Sigma38 | 6.0 | -89.0 | frdA, frdB, frdC, frdD |
tgttgtacctATAAAGGAGCAGTGGAatagcgttcg
|
4382399 | 4382414 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | repressor | frdAp | Sigma70, Sigma38 | 14.0 | -81.0 | frdA, frdB, frdC, frdD |
ctataaaggaGCAGTGGAATAGCGTTcgcagaccgt
|
4382391 | 4382406 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | hcpp | nd | -109.0 | -140.0 | hcp, hcr, poxB |
ttttctctgcGTAATACCTCTCTGGCggtagatccc
|
913946 | 913961 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [21], [22] | |
NarL-Phosphorylated | activator | hcpp | nd | -100.0 | -131.0 | hcp, hcr, poxB |
cgtaatacctCTCTGGCGGTAGATCCctgccgccaa
|
913937 | 913952 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [21], [22] | |
NarL-Phosphorylated | repressor | hyaAp | Sigma70, Sigma38 | -10.0 | -165.0 | hyaA, hyaB, hyaC, hyaD, hyaE, hyaF |
gtgcaaaagtTTCACTACGCTTTATTaacaatactt
|
1031966 | 1031981 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [23] | |
NarL-Phosphorylated | repressor | hyaAp | Sigma70, Sigma38 | 7.0 | -149.0 | hyaA, hyaB, hyaC, hyaD, hyaE, hyaF |
acgctttattAACAATACTTTCTGGCgacgtgcgcc
|
1031982 | 1031997 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [23] | |
NarL-Phosphorylated | repressor | hybOp1 | Sigma70 | -76.0 | -178.0 | hybO, hybA, hybB, hybC, hybD, hybE, hybF, hybG |
aaattgatcaAACATACGTATTATCTtgctttaatt
|
3146431 | 3146446 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [23] | |
NarL-Phosphorylated | repressor | hybOp1 | Sigma70 | -51.0 | -153.0 | hybO, hybA, hybB, hybC, hybD, hybE, hybF, hybG |
ttgctttaatTAATTACACTAATGCTtcttcccttc
|
3146406 | 3146421 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [23] | |
NarL-Phosphorylated | repressor | hybOp1 | Sigma70 | 21.0 | -82.0 | hybO, hybA, hybB, hybC, hybD, hybE, hybF, hybG |
aaccataataAATGTGTGGTAAATGGcgcatcgatc
|
3146335 | 3146350 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [23] | |
NarL-Phosphorylated | activator | moeAp | Sigma70 | -177.0 | -207.0 | moeA, moeB |
tgcaatgactGCTTTGCCCATAGTATtcgtccatta
|
866563 | 866578 | [AIBSCS], [CV(GEA)], [GEA] | [24] | |
NarL-Phosphorylated | activator | moeAp | Sigma70 | -109.0 | -139.0 | moeA, moeB |
gaatttttatGAATTACTCATTCAATttttgaatat
|
866495 | 866510 | [AIBSCS], [CV(GEA)], [GEA] | [24] | |
NarL-Phosphorylated | repressor | napFp1 | Sigma70 | -49.0 | -126.0 | napF, napD, napA, napG, napH, napB, napC, ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH |
cctgctacagGTTTTACCCCGATCGGggtatgcatc
|
2303615 | 2303630 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [25], [26], [27] | |
NarL-Phosphorylated | repressor | napFp1 | Sigma70 | -40.0 | -117.0 | napF, napD, napA, napG, napH, napB, napC, ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH |
ggttttacccCGATCGGGGTATGCATctttgacaca
|
2303606 | 2303621 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [25], [26], [27] | |
NarL-Phosphorylated | repressor | napFp2 | Sigma70 | -46.0 | -126.0 | napF, napD, napA, napG, napH, napB, napC, ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH |
cctgctacagGTTTTACCCCGATCGGggtatgcatc
|
2303615 | 2303630 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [25], [26], [27] | |
NarL-Phosphorylated | repressor | napFp2 | Sigma70 | -37.0 | -117.0 | napF, napD, napA, napG, napH, napB, napC, ccmA, ccmB, ccmC, ccmD, ccmE, ccmF, ccmG, ccmH |
ggttttacccCGATCGGGGTATGCATctttgacaca
|
2303606 | 2303621 | [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [25], [26], [27] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -208.0 | -265.0 | narG, narH, narJ, narI |
gagccattaaTATGTTACCCATGGGGaatactcctt
|
1279591 | 1279606 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5], [28], [29] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -195.0 | -252.0 | narG, narH, narJ, narI |
gttacccatgGGGAATACTCCTTAATacccatctgc
|
1279604 | 1279619 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [5], [28], [29], [30] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -185.0 | -242.0 | narG, narH, narJ, narI |
gggaatactcCTTAATACCCATCTGCataaaaatct
|
1279614 | 1279629 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [5], [28], [29], [30] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -101.0 | -158.0 | narG, narH, narJ, narI |
ttatgtggtgGCTGTTAATTATCCTAaaggggtatc
|
1279698 | 1279713 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [5], [18], [19], [28], [29], [30] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -89.0 | -146.0 | narG, narH, narJ, narI |
tgttaattatCCTAAAGGGGTATCTTaggaatttac
|
1279710 | 1279725 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [5], [28], [29], [30] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -79.0 | -136.0 | narG, narH, narJ, narI |
cctaaaggggTATCTTAGGAATTTACtttatttttc
|
1279720 | 1279735 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5], [28], [29] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -71.0 | -128.0 | narG, narH, narJ, narI |
ggtatcttagGAATTTACTTTATTTTtcatccccat
|
1279728 | 1279743 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5], [28], [29] | |
NarL-Phosphorylated | activator | narGp | Sigma70 | -57.0 | -114.0 | narG, narH, narJ, narI |
ttactttattTTTCATCCCCATCACTcttgatcgtt
|
1279742 | 1279757 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5], [28], [29] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -214.0 | -239.0 | narK |
ctattggctgAAGTATACCCATACCCggaaagagtt
|
1277710 | 1277725 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -194.0 | -219.0 | narK |
atacccggaaAGAGTTACTCCTTATTtgccgtgtgg
|
1277730 | 1277745 | [APIORCISFBSCS], [BPP], [CV(SM)], [SM] | [5], [31] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -177.0 | -202.0 | narK |
ctccttatttGCCGTGTGGTTAGTCGctttacatcg
|
1277747 | 1277762 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -160.0 | -185.0 | narK |
ggttagtcgcTTTACATCGGTAAGGGtagggatttt
|
1277764 | 1277779 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -154.0 | -179.0 | narK |
tcgctttacaTCGGTAAGGGTAGGGAttttacagca
|
1277770 | 1277785 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -103.0 | -128.0 | narK |
taatttttatGAAGTCACTGTACTCActatgggtaa
|
1277821 | 1277836 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -98.0 | -123.0 | narK |
tttatgaagtCACTGTACTCACTATGggtaatgata
|
1277826 | 1277841 | [APIORCISFBSCS], [BPP] | [5], [31] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -90.0 | -115.0 | narK |
gtcactgtacTCACTATGGGTAATGAtaaatatcaa
|
1277834 | 1277849 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -80.0 | -105.0 | narK |
tcactatgggTAATGATAAATATCAAtgatagataa
|
1277844 | 1277859 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | activator | narKp1 | Sigma70 | -67.0 | -92.0 | narK |
tgataaatatCAATGATAGATAAAGTtatcttatcg
|
1277857 | 1277872 | [APIORCISFBSCS], [BPP] | [5] | |
NarL-Phosphorylated | repressor | nikAp1 | nd | nd | nd | nikA, nikB, nikC, nikD, nikE, nikR | nd | nd | [GEA] | [32] | ||
NarL-Phosphorylated | activator | nirBp | Sigma70 | -74.0 | -98.0 | nirB, nirD, nirC, cysG |
tacaaatcagCAATATACCCATTAAGgagtatataa
|
3493905 | 3493920 | [BCE], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [15], [18], [33], [34] | |
NarL-Phosphorylated | activator | nirBp | Sigma70 | -65.0 | -89.0 | nirB, nirD, nirC, cysG |
gcaatataccCATTAAGGAGTATATAaaggtgaatt
|
3493914 | 3493929 | [BCE], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [15], [18], [33], [34] | |
NarL-Phosphorylated | repressor | norVp | Sigma54 | -78.0 | -115.0 | norV, norW |
gatagtcattTTGACTACTCATTAATgggcataatt
|
2832353 | 2832368 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [35] | |
NarL-Phosphorylated | repressor | norVp | Sigma54 | -69.0 | -106.0 | norV, norW |
tttgactactCATTAATGGGCATAATtttatttata
|
2832362 | 2832377 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [35] | |
NarL-Phosphorylated | activator | nrfAp | Sigma70 | -79.0 | -172.0 | nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG |
gaggaagataCTGACTAACTCTAAAGtggtatttta
|
4287584 | 4287599 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [18], [19], [34], [36], [37], [38] | |
NarL-Phosphorylated | activator | nrfAp | Sigma70 | -70.0 | -163.0 | nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG |
actgactaacTCTAAAGTGGTATTTTacatgcactt
|
4287593 | 4287608 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [18], [19], [34], [36], [37], [38] | |
NarL-Phosphorylated | activator | nrfAp | Sigma70 | -50.0 | -143.0 | nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG |
tattttacatGCACTTACAATTGATTaaagacaaca
|
4287613 | 4287628 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [18], [19], [34], [36], [38] | |
NarL-Phosphorylated | repressor | nrfAp | Sigma70 | -50.0 | -143.0 | nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG |
tattttacatGCACTTACAATTGATTaaagacaaca
|
4287613 | 4287628 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [18], [19], [34], [36], [38] | |
NarL-Phosphorylated | repressor | nrfAp | Sigma70 | -22.0 | -115.0 | nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG |
agacaacattCACAGTGTGGTTATTTgttacacata
|
4287641 | 4287656 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [18], [19], [34], [36], [38] | |
NarL-Phosphorylated | activator | nuoAp2 | Sigma70 | -122.0 | -212.0 | nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN |
gaaagggcatTAAATGCTAATGGTGTtgatattatg
|
2405276 | 2405291 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [39] | |
NarL-Phosphorylated | activator | ogtp | nd | -83.0 | -131.0 | ogt |
gacgcgaaacTGGGTACTTACTATTCgttagtcttg
|
1400359 | 1400374 | [BPP] | [40] | |
NarL-Phosphorylated | activator | ogtp | nd | -74.0 | -122.0 | ogt |
ctgggtacttACTATTCGTTAGTCTTgccctatcca
|
1400350 | 1400365 | [BPP] | [40] | |
NarL-Phosphorylated | activator | ogtp | nd | -50.0 | -98.0 | ogt |
ttgccctatcCACTTATCTTTTTGGTggtatggctg
|
1400326 | 1400341 | [BPP] | [40] | |
NarL-Phosphorylated | activator | ogtp | nd | -41.0 | -89.0 | ogt |
ccacttatctTTTTGGTGGTATGGCTgctgatgttg
|
1400317 | 1400332 | [BPP] | [40] | |
NarL-Phosphorylated | repressor | ompWp | nd | -18.5 | -47.5 | ompW |
gatcatttgtTACTCCAATGTAGGTATattcgtcacg
|
1313965 | 1313981 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [15], [38], [41] | |
NarL-Phosphorylated | repressor | torCp | Sigma70 | nd | nd | torC, torA, torD | nd | nd | [IMP] | [42] | ||
NarL-Phosphorylated | repressor | ubiCp | Sigma70 | nd | nd | ubiC, ubiA | nd | nd | [GEA] | [43] | ||
NarL-Phosphorylated | activator | ydePp | Sigma70 | nd | nd | ydeP | nd | nd | [BPP], [GEA] | [44] | ||
NarL-Phosphorylated | repressor | ydhYp | Sigma38 | -42.0 | -207.0 | ydhY, ydhV, ydhW, ydhX, ydhU, ydhT |
gtaattttaaTTGATAACGATCAATGttaagggctc
|
1754676 | 1754691 | [APIORCISFBSCS], [CV(GEA)], [GEA] | [45] | |
NarL-Phosphorylated | repressor | ydhYp | Sigma38 | -16.0 | -181.0 | ydhY, ydhV, ydhW, ydhX, ydhU, ydhT |
ttaagggctcAGAATAATCACATTATtttttctcct
|
1754650 | 1754665 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [45] | |
NarL-Phosphorylated | repressor | ydhYp | Sigma38 | 6.0 | -160.0 | ydhY, ydhV, ydhW, ydhX, ydhU, ydhT |
attattttttCTCCTAACCATAAAGGattagtttat
|
1754629 | 1754644 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [45] | |
NarL-Phosphorylated | repressor | ydhYp | Sigma38 | 15.0 | -151.0 | ydhY, ydhV, ydhW, ydhX, ydhU, ydhT |
tctcctaaccATAAAGGATTAGTTTAtcggcgttaa
|
1754620 | 1754635 | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [45] | |
NarL-Phosphorylated | activator | yeaRp | Sigma70 | -48.0 | -94.0 | yeaR, yoaG |
atggtgctaaAAAGTAACCAATAAATggtatttaaa
|
1880034 | 1880049 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [40], [46] | |
NarL-Phosphorylated | activator | yeaRp | Sigma70 | -39.0 | -85.0 | yeaR, yoaG |
aaaagtaaccAATAAATGGTATTTAAaatgcaaatt
|
1880025 | 1880040 | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [40], [46] | |
NarL-Phosphorylated | repressor | ynfEp | Sigma70, Sigma38 | -23.0 | -89.0 | ynfE, ynfF, ynfG, ynfH, dmsD |
tggattaataATTCTTAACCCAAAATgggtagactc
|
1657972 | 1657987 | [AIBSCS], [BPP] | [47] | |
NarL-Phosphorylated | repressor | ynfEp | Sigma70, Sigma38 | -14.0 | -80.0 | ynfE, ynfF, ynfG, ynfH, dmsD |
aattcttaacCCAAAATGGGTAGACTccctctattg
|
1657981 | 1657996 | [AIBSCS], [BPP] | [47] | |
NarL-Phosphorylated | activator | ytfEp | nd | -50.0 | -76.0 | ytfE |
gttaaataagCCTCTGCTACGTAAGGgttatagctt
|
4432051 | 4432066 | [AIBSCS] | [48] | |
NarL-Phosphorylated | activator | ytfEp | nd | -41.0 | -67.0 | ytfE |
gcctctgctaCGTAAGGGTTATAGCTtttgccttaa
|
4432042 | 4432057 | [AIBSCS] | [48] |
Alignment and PSSM for NarL TFBSs | ![]() |
---|
Aligned TFBS of NarL |
---|
Sequence | |
---|---|
ATACCCATTAAGGAGTA | |
ATACCCCGATCGGGGTA | |
ATAACCCTTACGTAGCA | |
ATACCCCTTTAGGATAA | |
CTACTCATTAATGGGCA | |
CTACCGCTATTGAGGTA | |
TTACTCACTTCTGGGTA | |
TTACCCCTTAATTATTA | |
CTAACTCTAAAGTGGTA | |
CTAATCCTTTATGGTTA | |
ATACCTACATTGGAGTA | |
ATAATGCTTTGTTAGTA | |
TTAACCCAAAATGGGTA | |
GTACCTATAAAGGAGCA | |
GTACTCACTATGGGTAA | |
ATAACGATCAATGTTAA | |
CTACCCTTACCGATGTA | |
ATACCCATACCCGGAAA | |
CTACCTATCTCTTTGAT | |
ATACCATTTATTGGTTA | |
TTACTCCTTATTTGCCG | |
TTACTCCGTATTTGCAT | |
ATACTACTTTCGAGTGA | |
GTAATTCAAAGGGAGTA | |
ATACCTCACAGTGAATA | |
CTAACGAATAGTAAGTA | |
GTAATTATAAGGTTAAA | |
TTACCGATATTTAACCT | |
TTAATGATTAGTCTGAG | |
ATACTCCTTAATACCCA | |
TTACTCCTCACTTACAC | |
ATAATCCGCCTTCGCAA | |
ATAACCACACTGTGAAT | |
TTAATTACATCCGTCAA | |
TTACCACACATTTATTA | |
CTAACCACACGGCAAAT | |
CTACCTCGATGGTTTAG | |
ATACCACCAAAAAGATA | |
ATAACTTTATCTATCAT | |
CTACCGCCAGAGAGGTA | |
ATTATGATAAGTTGGAT | |
ATAATACGTATGTTTGA | |
TAAATGCTAATGGTGTT | |
GTAACAATATCGATCGT | |
GTATTCCCCATGGGTAA | |
TTAATCAATTGTAAGTG | |
ATAATCACATTATTTTT | |
ATCCCCATCACTCTTGA | |
TTACTCATTCAATTTTT | |
TAAATAACATGTGTGAA | |
ACAATACTTTCTGGCGA | |
CAACTCATTTGTTAATT | |
CTACGCTTTATTAACAA | |
ATTACACTAATGCTTCT | |
TTATCCATCAGACTATA | |
GTTCTGTTTTGTATGAA | |
ATATCAATTTCTCATCT | |
TTACTTCGGCCGGTACA | |
ATAATTAACAGCCACCA |