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Synonyms: GlaR-glutarate, GlaR |
Summary:
The transcription factor CsiR, for "Carbon starvation induced Regulator," was initially identified as a repressor that controls the transcription of genes involved in the degradation and transport of 4-aminobutyrate (GABA) for utilization as a source of nitrogen [2, 4, 5]. However, CsiR does not appear to respond directly to the presence of GABA [5], and later reports suggested that it does not affect expression of gabDTP [2, 3]. CsiR represses transcription from the csiD promoter during stationary phase [2]. Currently, no DNA-binding sites for this regulator have been reported in the literature [2]. csiR expression is induced at stationary phase, but is not autoregulated and not dependent on σS [2]. A csiR mutant (gabC1) has the ability to utilize γ-aminobutyrate (GABA) as the sole source of nitrogen [5, 6, 7, 8]. In an experiment using directed cell evolution of a ΔpanD mutant (containing a damaged CoA biosynthesis pathway), a pathway for β-alanine biosynthesis via uracil degradation emerged. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | GntR | |||||||||||||||||||||
TFBs length: | 13 | |||||||||||||||||||||
TFBs symmetry: | inverted-repeat | |||||||||||||||||||||
Connectivity class: | Local Regulator | |||||||||||||||||||||
Gene name: | glaR | |||||||||||||||||||||
Genome position: | 2795674-2796336 | |||||||||||||||||||||
Length: | 663 bp / 220 aa | |||||||||||||||||||||
Operon name: | glaR | |||||||||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | gabD, gabP, gabT, glaH, lhgD | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
aminobutyrate catabolism (2)
putrescine catabolism (2)
amino acids (2)
carbon compounds (1)
Porters (Uni-, Sym- and Antiporters) (1)
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Regulated operon(s) | glaH-lhgD-gabDTP | ||||||
First gene in the operon(s) | glaH | ||||||
Simple and complex regulons | CRP,GlaR,H-NS,Lrp,ppGpp | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GlaR | repressor | csiDp | Sigma38 | -32.0 | -90.0 | glaH, lhgD, gabD, gabT, gabP |
tatgtcgcttTTGTGCGCATTTTTcagaaatgta
|
2788889 | 2788902 | [EXP-IEP], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | S | [1], [1], [2] | |
GlaR | repressor | csiDp | Sigma38 | -13.0 | -71.0 | glaH, lhgD, gabD, gabT, gabP |
tttttcagaaATGTAGATATTTTTagattatggc
|
2788908 | 2788921 | [EXP-IEP], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [1], [1], [2], [3], [3] |
Functional conformation | Function | Object name | Object type | Distance to first Gene | Sequence | LeftPos | RightPos | Center Position | Growth Condition | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GlaR | activator | pliG | Gene | nd |
acttaatttgAATATCGACGTTATATtttttagttt
|
1227083 | 1227098 | 1227090.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ydfK | Gene | nd |
aaactgttatCTATGTATACTTTTAAacccaatccg
|
1632674 | 1632689 | 1632681.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ydeO | Gene | nd |
atgttagtgcATTGTAGATATTTTTTaatggtattt
|
1583498 | 1583513 | 1583505.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | safA | Gene | nd |
atgttagtgcATTGTAGATATTTTTTaatggtattt
|
1583498 | 1583513 | 1583505.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ypdC | Gene | nd |
aaccgtggttTAATAACACCTACATTctgcgactga
|
2501021 | 2501036 | 2501028.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ygiW | Gene | nd |
tgggaaatcgATAATGTTTACATCCAgtgtcaggtt
|
3169200 | 3169215 | 3169207.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yehS | Gene | nd |
cgctgcgcagAATATCGTTACTTAGCatgaggcctt
|
2212179 | 2212194 | 2212186.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yehD | Gene | nd |
atctatcaatTAATGTAGATTTATGTaaatggtatt
|
2192409 | 2192424 | 2192416.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yodB | Transcription-Unit | nd |
agcaaagcccCTAAATATATACAATTtagcgatcat
|
2041850 | 2041865 | 2041857.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | rfbB | Gene | nd |
cgtacgttaaTTTATCGACATTAACAacactatcct
|
2112963 | 2112978 | 2112970.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | bdcA | Gene | nd |
ggcgatcaatATCGTCGGCATTTAATtccagggcct
|
4473760 | 4473775 | 4473767.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yfcV | Gene | nd |
attaacccgcTTTTGTCGATATAATAtataaacact
|
2456007 | 2456022 | 2456014.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yfbO | Gene | nd |
atacgtatggAATTGTCACTATTTATctgctaatga
|
2388559 | 2388574 | 2388566.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | htrE | Gene | nd |
cccaggcttgAGGAACGTCTATATCCagacgttgat
|
154968 | 154983 | 154975.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ycgY | Gene | nd |
attcagaaaaTAAATATTTTAGACAGtagccagtca
|
1245173 | 1245188 | 1245180.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yfdV | Gene | nd |
cgtcaccggcAGGTTATATCGACAAAtcgtttcaat
|
2490557 | 2490572 | 2490564.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | rpiB | Gene | nd |
cagagcgtacTGATTATCCACATTACgccagtcaag
|
4313472 | 4313487 | 4313479.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | alaE | Gene | nd |
catatcggcaTGTAAAAATCCACAATgtacaaaaaa
|
2798969 | 2798984 | 2798976.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ychQ | Gene | nd |
catctggcgaTCAAAAATATCCACATtctgcaaagc
|
1266566 | 1266581 | 1266573.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | cysN | Gene | nd |
tatagcggaaCAATGTCGATATTTTCcagccagatg
|
2875714 | 2875729 | 2875721.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | orn | Transcription-Unit | nd |
ccctgatgggCAAAACATCTATGATAcacgcaattg
|
4391540 | 4391555 | 4391547.0 | nd | [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ], [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | idnD | Gene | nd |
ttcatccagcCAAAAATATAGATAAAatgtcgcagg
|
4494742 | 4494757 | 4494749.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yigG | Gene | nd |
tattttttcaGAATATATTTATTTTTtatttggacg
|
4003273 | 4003288 | 4003280.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yfbU | Gene | nd |
tgatacatctCCATAATGTCGATGATagtgcggcag
|
2412396 | 2412411 | 2412403.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | pdhR | Gene | nd |
ctttcctacgTAAAGTCTACATTTGTgcatagttac
|
121903 | 121918 | 121910.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | murD | Gene | nd |
gattatcaggGTAAAAATGTCGTCATtatcggcctg
|
97103 | 97118 | 97110.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | hinT | Gene | nd |
gcagaaatggGAATAATGGCGATATAtacggcagca
|
1161728 | 1161743 | 1161735.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | bssS | Gene | nd |
gattcctgctTCTAATATCGAAATAAattgtctggc
|
1120762 | 1120777 | 1120769.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | rpsF | Gene | nd |
gctttgcacaTCGTCCATATTTCTGGcctggtggtt
|
4424691 | 4424706 | 4424698.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | lsrG | Gene | nd |
ggaacccctcTTTATATCTACACTTTtccgctgaac
|
1607366 | 1607381 | 1607373.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | gadX | Gene | nd |
tcaccgccatTAAAATAGCGATATTCaccattaacc
|
3665723 | 3665738 | 3665730.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | smg | Transcription-Unit | nd |
tagcagggcaTTGTAGATATCTTCTCgctcaaaacc
|
3432340 | 3432355 | 3432347.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | gltF | Gene | nd |
tattatccttAATTATCTATATATTTtcctattttt
|
3360933 | 3360948 | 3360940.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yfbN | Gene | nd |
atacgtatggAATTGTCACTATTTATctgctaatga
|
2388559 | 2388574 | 2388566.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | dctR | Gene | nd |
tctggagaaaCTGAAAATATCGCTAAaaacgttcta
|
3655100 | 3655115 | 3655107.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yidB | Transcription-Unit | nd |
gttagcgccaTTAAATATCGATATTCgccgctttca
|
3877705 | 3877720 | 3877712.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ygjI | Transcription-Unit | nd |
tgaagcgattGAAAATATCGACAACAttcagcctgg
|
3225803 | 3225818 | 3225810.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | kdsA | Gene | nd |
tgctgcattaATTAATCGACATTTTActcaagatta
|
1268129 | 1268144 | 1268136.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yjjP | Gene | nd |
cctaacaactTAATGTAGATATTTTAaatgtctcca
|
4603252 | 4603267 | 4603259.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | priC | Gene | nd |
atggtttggcAGCTATCTACGTTTCTggcagaaaca
|
491053 | 491068 | 491060.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | cadC | Gene | nd |
tcttccagacATTATCGATAAGTTCAtccctgctaa
|
4361767 | 4361782 | 4361774.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yihD | Gene | nd |
ttcaggacgaAGATCGTCGACGTTTTgtcgtcaaat
|
4042555 | 4042570 | 4042562.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | ppiB | Gene | nd |
ttcgcgcgggAAATATGGGTATTATAcgcaactcaa
|
554555 | 554570 | 554562.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | activator | yadN | Transcription-Unit | nd |
atgattttcaGAAAATATTTATATTCgcaatataaa
|
157223 | 157238 | 157230.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ydcK | Transcription-Unit | nd |
gttcttcactTAGACGATATTTGCGCatagcgtttt
|
1500432 | 1500447 | 1500439.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ycbV | Gene | nd |
aaaagtgcatTACAAAATATTCATATtggtgatttt
|
1003037 | 1003052 | 1003044.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ycbU | Gene | nd |
aaaagtgcatTACAAAATATTCATATtggtgatttt
|
1003037 | 1003052 | 1003044.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yccT | Gene | nd |
tcatacttacTAACATATAGACATATttcccgcttt
|
1027840 | 1027855 | 1027847.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | mrdA | Gene | nd |
tttgctgcacGTTATCGACTTTCTCCggcatcattt
|
667927 | 667942 | 667934.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yjfY | Transcription-Unit | nd |
gctttgcacaTCGTCCATATTTCTGGcctggtggtt
|
4424691 | 4424706 | 4424698.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ygiV | Transcription-Unit | nd |
tgggaaatcgATAATGTTTACATCCAgtgtcaggtt
|
3169200 | 3169215 | 3169207.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | mglA | Gene | nd |
caggcattttAATAATGTCGATTTTCctgcaccgtt
|
2239123 | 2239138 | 2239130.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yciU | Gene | nd |
gaatgcgggcAAAAACATCGTTGATTtcaccatctt
|
1306884 | 1306899 | 1306891.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | dinQ | Gene | nd |
ggaagagaagATTGTCGGTATTCACGgcattggctt
|
3647502 | 3647517 | 3647509.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ydhS | Transcription-Unit | nd |
aagtaacaatGAAAAAAATTGCTATTgtgggtgccg
|
1747133 | 1747148 | 1747140.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ttdA | Gene | nd |
aagttgacagAGATTGTCGCTAACTTtaccgccatg
|
3206509 | 3206524 | 3206516.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | rhsD | Gene | nd |
aagtttatgtGAAAAATATATAAATAcattagctgg
|
523164 | 523179 | 523171.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yehE | Gene | nd |
atctatcaatTAATGTAGATTTATGTaaatggtatt
|
2192409 | 2192424 | 2192416.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | oxc | Gene | nd |
tcgatttcagCAAAAATATCGAAAATatgtggctgt
|
2492327 | 2492342 | 2492334.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yhcD | Gene | nd |
acgcgctttgATGAAAATGGCGACATttgtcttgat
|
3363042 | 3363057 | 3363049.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ycjP | Gene | nd |
acgctggagcATTACGTCGACATTTTtaacccgatg
|
1374262 | 1374277 | 1374269.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ycgJ | Gene | nd |
acttaatttgAATATCGACGTTATATtttttagttt
|
1227083 | 1227098 | 1227090.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | dgcN | Gene | nd |
agaaaaatgaTGGATAACGATAATTCtcttaataag
|
2742387 | 2742402 | 2742394.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ynaE | Transcription-Unit | nd |
gggtttaaaaGTATACATAGATAACAgtttttatct
|
1434613 | 1434628 | 1434620.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | zraR | Gene | nd |
aggatgacgcACGATAATATCGATATtctggtggtg
|
4203327 | 4203342 | 4203334.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | baeS | Gene | nd |
atacgcatcaAAATGTAGCTATTTCGcggcgaaaaa
|
2162840 | 2162855 | 2162847.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ybaN | Transcription-Unit | nd |
atggtttggcAGCTATCTACGTTTCTggcagaaaca
|
491053 | 491068 | 491060.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | apt | Gene | nd |
atggtttggcAGCTATCTACGTTTCTggcagaaaca
|
491053 | 491068 | 491060.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | rsgA | Transcription-Unit | nd |
ccctgatgggCAAAACATCTATGATAcacgcaattg
|
4391540 | 4391555 | 4391547.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yjdP | Gene | nd |
cagagcgtacTGATTATCCACATTACgccagtcaag
|
4313472 | 4313487 | 4313479.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | prmC | Gene | nd |
catctggcgaTCAAAAATATCCACATtctgcaaagc
|
1266566 | 1266581 | 1266573.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ttdR | Gene | nd |
aagttgacagAGATTGTCGCTAACTTtaccgccatg
|
3206509 | 3206524 | 3206516.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | sgcC | Gene | nd |
gccagtaattGTAAATATCGACGTTCatcgttttgg
|
4529884 | 4529899 | 4529891.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yjjQ | Gene | nd |
cctaacaactTAATGTAGATATTTTAaatgtctcca
|
4603252 | 4603267 | 4603259.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | rssB | Gene | nd |
cctgtttgccCGCAAATATCTACGCTtgatttccat
|
1290038 | 1290053 | 1290045.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yfdC | Transcription-Unit | nd |
cctttggtttTATTATCGTCATTATGgcccgccagc
|
2465606 | 2465621 | 2465613.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | chaBC | Transcription-Unit | nd |
cgtctcatgcCCAGGATATCTATAAAgaagcgttca
|
1272181 | 1272196 | 1272188.0 | nd | [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ], [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yfjD | Transcription-Unit | nd |
cgtggcgtggTTTGTCTATATTGTGCtgctgtgggg
|
2748613 | 2748628 | 2748620.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yihM | Gene | nd |
cgtttttctcTTGGTAATATGGACGAtaaagaactc
|
4061355 | 4061370 | 4061362.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | hxpA | Gene | nd |
tgatacatctCCATAATGTCGATGATagtgcggcag
|
2412396 | 2412411 | 2412403.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ldcC | Gene | nd |
ctggggcaggCGGAAGATATCGCCATtcgtatgcgt
|
210007 | 210022 | 210014.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | nlpA | Gene | nd |
gcggcccctgTCCGTAGATGATGTGTtgtcagtttc
|
3839966 | 3839981 | 3839973.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ycgV | Transcription-Unit | nd |
agaaaaagcaAAAAACATCGATATTCatttttggtc
|
1256356 | 1256371 | 1256363.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | inaA | Gene | nd |
acattactctTTATTAAGAAATTTTActgccttatc
|
2349942 | 2349957 | 2349949.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | gcvA | Gene | nd |
gccccgaccaTAAAATATCGCCACATcaacatcatc
|
2942128 | 2942143 | 2942135.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | casA | Gene | nd |
ccgttattggTCTTATTATCGTCATTgataacaatc
|
2884517 | 2884532 | 2884524.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | elfC | Gene | nd |
gcgagatgtaTAGAACTCATCGACAAcacagcctgt
|
999221 | 999236 | 999228.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | pdxA | Gene | nd |
gcagcgtcggTTTTATCGACATTACGggtatccagc
|
53538 | 53553 | 53545.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | tam | Gene | nd |
ggaacccctcTTTATATCTACACTTTtccgctgaac
|
1607366 | 1607381 | 1607373.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | bdcR | Transcription-Unit | nd |
ggcgatcaatATCGTCGGCATTTAATtccagggcct
|
4473760 | 4473775 | 4473767.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yeaE | Gene | nd |
tggaaagatgCATTATCAGAATTTGTaggtgatccc
|
1865721 | 1865736 | 1865728.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ppx | Gene | nd |
gggtactggaCATCATCGACATATTGttcagcgata
|
2624960 | 2624975 | 2624967.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yqhC | Transcription-Unit | nd |
ctgtaactgcAAAATATCGACATTGAgacgcaaccc
|
3154845 | 3154860 | 3154852.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | aroP | Gene | nd |
ctttcctacgTAAAGTCTACATTTGTgcatagttac
|
121903 | 121918 | 121910.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ynjH | Gene | nd |
ttgaacaaaaTCCAAAATATCGCCAGatgtcattac
|
1842496 | 1842511 | 1842503.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | tehA | Gene | nd |
gttcttcactTAGACGATATTTGCGCatagcgtttt
|
1500432 | 1500447 | 1500439.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | gadW | Gene | nd |
tttcttatgaGAAAACATCGATAAACaggaaaggta
|
3664257 | 3664272 | 3664264.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | kdgT | Transcription-Unit | nd |
tattgattaaATGAATGTCTATCTTCgtttccatca
|
4101601 | 4101616 | 4101608.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yccU | Transcription-Unit | nd |
tcatacttacTAACATATAGACATATttcccgcttt
|
1027840 | 1027855 | 1027847.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | chaA | Transcription-Unit | nd |
cgtctcatgcCCAGGATATCTATAAAgaagcgttca
|
1272181 | 1272196 | 1272188.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | tar | Gene | nd |
ccagtattgcCATAATCTAGATAATCaatcagttca
|
1972262 | 1972277 | 1972269.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yfiR | Gene | nd |
tgagcattctGAAAAAATATCGATGCatttcgagcg
|
2741829 | 2741844 | 2741836.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yfiL | Gene | nd |
tgagcattctGAAAAAATATCGATGCatttcgagcg
|
2741829 | 2741844 | 2741836.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | phoH | Gene | nd |
tgcgcgtagcCGTTTTTCGGCATTTTatccaaaagc
|
1085142 | 1085157 | 1085149.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | fhuE | Gene | nd |
gcagaaatggGAATAATGGCGATATAtacggcagca
|
1161728 | 1161743 | 1161735.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ydfI | Transcription-Unit | nd |
tcggggcataGCTTTTATCTACAATGatagaaagca
|
1631374 | 1631389 | 1631381.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | pdeG | Transcription-Unit | nd |
tgtttattacCGGTGTCGCTATTTTGaacatccagc
|
1217378 | 1217393 | 1217385.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yobD | Gene | nd |
ttaatccgcgTTCGAAATATCGACGAtctggaaaaa
|
1905204 | 1905219 | 1905211.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | aroB | Gene | nd |
tacgttccccGAGAGTAACGACAATCctctccataa
|
3518463 | 3518478 | 3518470.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | idnK | Gene | nd |
ttcatccagcCAAAAATATAGATAAAatgtcgcagg
|
4494742 | 4494757 | 4494749.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | ypjA | Transcription-Unit | nd |
agtgtggttgGATAAAAAAGTCAATCcattcaggaa
|
2782942 | 2782957 | 2782949.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | cysS | Gene | nd |
ttcgcgcgggAAATATGGGTATTATAcgcaactcaa
|
554555 | 554570 | 554562.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | gdhA | Gene | nd |
ttgaacaaaaTCCAAAATATCGCCAGatgtcattac
|
1842496 | 1842511 | 1842503.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] | |
GlaR | repressor | yfcO | Gene | nd |
gacaacttgcTTTGTTGATATTTTGAtggtagccaa
|
2449768 | 2449783 | 2449775.0 | nd | [EXP-IEP-RNA-SEQ], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-SEQ] | S | [3] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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