![]() ![]() |
Synonyms: AllR-allantoin, AllR, AllR-Glyoxylate |
Transcription factor | ![]() ![]() |
||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF conformation(s): |
|
||||||||||||||||||||||||
Evolutionary Family: | IclR | ||||||||||||||||||||||||
Sensing class: | External sensing using transported metabolites | ||||||||||||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||||||||||||
Gene name: | allR | ||||||||||||||||||||||||
Genome position: | 533011-533826 | ||||||||||||||||||||||||
Length: | 816 bp / 271 aa | ||||||||||||||||||||||||
Operon name: | allR | ||||||||||||||||||||||||
TU(s) encoding the TF: |
|
Regulon |
![]() ![]() |
||||||
---|---|---|---|---|---|---|---|
Regulated gene(s) | allA, allB, allS, gcl, glxK, glxR, hyi, ybbW, ybbY | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
glyoxylate degradation (3)
allantoin assimilation (2)
nitrogen metabolism (2)
glycolate metabolism (2)
carbon compounds (2)
Read more >
|
||||||
Regulated operon(s) | allA, allS, gcl-hyi-glxR-ybbW-allB-ybbY-glxK | ||||||
First gene in the operon(s) | allA, allS, gcl | ||||||
Simple and complex regulons | AllR | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence (Confirmed, Strong, Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
AllR-allantoin | repressor | allAp | nd | -53.0 | -114.0 | allA |
aaatctagttTTGGAAAAATATTCCAActtttgtatt
|
532329 | 532345 | [BCE], [BPP], [GEA], [SM] | [1], [2] | |
AllR-allantoin | repressor | allSp | nd | -37.0 | -116.0 | allS |
aatacaaaagTTGGAATATTTTTCCAAaactagattt
|
532329 | 532345 | [BCE], [BPP], [GEA], [SM] | [1], [2] | |
AllR-allantoin | repressor | gclp | Sigma70 | -20.0 | -29.0 | gcl, hyi, glxR, ybbW, allB, ybbY, glxK |
aatttgaaagTTGGAAAAATTTTCCAAtaaatagagg
|
533879 | 533895 | [BCE], [BPP], [GEA], [SM] | [1], [2] |
Evolutionary conservation of regulatory elements | ![]() |
---|
Reference(s) |
![]() |
---|---|