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Synonyms: NtrC-phosphorylated |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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TFBs symmetry: | inverted-repeat | ||||||||||||||
Sensing class: | External-Two-component systems | ||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||
Gene name: | glnG | ||||||||||||||
Genome position: | 4053869-4055278 | ||||||||||||||
Length: | 1410 bp / 469 aa | ||||||||||||||
Operon name: | glnALG | ||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | amtB, argT, astA, astB, astC, astD, astE, cbl, ddpA, ddpB, ddpC, ddpD, ddpF, ddpX, glnA, glnG, glnH, glnK, glnL, glnP, glnQ, hisJ, hisM, hisP, hisQ, nac, patA, potF, potG, potH, potI, relA, rpoE, rseA, rseB, rseC, rseD, rutA, rutB, rutC, rutD, rutE, rutF, rutG, yeaG, yeaH, yhdW, yhdX, yhdY, yhdZ | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
membrane (12)
nitrogen metabolism (11)
ABC superfamily, membrane component (9)
other (mechanical, nutritional, oxidative stress) (8)
Transcription related (7)
Read more >
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Regulated operon(s) | argT-hisJQMP, astCADBE, cbl, ddpXABCDF, glnALG, glnHPQ, glnK-amtB, nac, patA, potFGHI, relA-mazEFG, rseD-rpoE-rseABC, rutABCDEFG, yeaGH, yhdWXYZ | ||||||
First gene in the operon(s) | argT, astC, cbl, ddpX, glnA, glnH, glnK, glnL, nac, patA, potF, relA, rseD, rutA, yeaG, yhdW | ||||||
Simple and complex regulons | ArcA,NtrC,PhoP,RutR ArgR,NtrC CRP,Fis,NtrC CRP,GlrR,NtrC,RcsB CRP,NtrC Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | References | |
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NtrC-phosphorylated | activator | argTp | Sigma54 | -190.0 | -248.0 | argT, hisJ, hisQ, hisM, hisP |
actccgctgtTGCCCTGTTTCAGGGCAattttgcaac
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2428031 | 2428047 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] | |
NtrC-phosphorylated | activator | argTp | Sigma54 | -83.0 | -141.0 | argT, hisJ, hisQ, hisM, hisP |
tatcttcaacTTCAGGACAATAATGCAacgtcttatt
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2427924 | 2427940 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] | |
NtrC-phosphorylated | activator | astCp2 | Sigma54 | -275.0 | -337.0 | astC, astA, astD, astB, astE |
gttgttaatgATGTCAACGATGGCGCAaaaaatgccc
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1832311 | 1832327 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2] | |
NtrC-phosphorylated | activator | astCp2 | Sigma54 | -253.0 | -315.0 | astC, astA, astD, astB, astE |
gcgcaaaaaaTGCCCGCTTTTGGTGCGcgctgcgtca
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1832289 | 1832305 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2] | |
NtrC-phosphorylated | activator | astCp2 | Sigma54 | -233.0 | -295.0 | astC, astA, astD, astB, astE |
tggtgcgcgcTGCGTCAGAATGGCGCAgtaatttcca
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1832269 | 1832285 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2] | |
NtrC-phosphorylated | activator | cblp | Sigma70 | nd | nd | cbl | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] | ||
NtrC-phosphorylated | activator | ddpXp1 | Sigma54 | -109.0 | -140.0 | ddpX, ddpA, ddpB, ddpC, ddpD, ddpF |
cttcccctctTGCACCAAAACTGCACTacgctgcaca
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1563208 | 1563224 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] | |
NtrC-phosphorylated | activator | ddpXp1 | Sigma54 | -88.0 | -119.0 | ddpX, ddpA, ddpB, ddpC, ddpD, ddpF |
tgcactacgcTGCACAAATGTTGATCAaaagttaaaa
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1563187 | 1563203 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] | |
NtrC-phosphorylated | repressor | glnAp1 | Sigma70 | -25.0 | -213.0 | glnA, glnL, glnG |
caaaggtcatTGCACCAACATGGTGCTtaatgtttcc
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4058239 | 4058255 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [4] | |
NtrC-phosphorylated | repressor | glnAp1 | Sigma70 | 8.0 | -181.0 | glnA, glnL, glnG |
tttccattgaAGCACTATATTGGTGCAacattcacat
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4058207 | 4058223 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [4] | |
NtrC-phosphorylated | repressor | glnAp1 | Sigma70 | 27.0 | -162.0 | glnA, glnL, glnG |
ttggtgcaacATTCACATCGTGGTGCAgcccttttgc
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4058188 | 4058204 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [5] | |
NtrC-phosphorylated | repressor | glnAp1 | Sigma70 | 48.0 | -141.0 | glnA, glnL, glnG |
ggtgcagcccTTTTGCACGATGGTGCGcatgataacg
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4058167 | 4058183 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION] | W | [3], [5] | |
NtrC-phosphorylated | repressor | glnAp1 | Sigma70 | 71.0 | -118.0 | glnA, glnL, glnG |
tgcgcatgatAACGCCTTTTAGGGGCAatttaaaagt
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4058144 | 4058160 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [3], [5] | |
NtrC-phosphorylated | activator | glnAp2 | Sigma54 | -140.0 | -213.0 | glnA, glnL, glnG |
caaaggtcatTGCACCAACATGGTGCTtaatgtttcc
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4058239 | 4058255 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [4], [6], [7] | |
NtrC-phosphorylated | activator | glnAp2 | Sigma54 | -108.0 | -181.0 | glnA, glnL, glnG |
tttccattgaAGCACTATATTGGTGCAacattcacat
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4058207 | 4058223 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [4], [7], [8] | |
NtrC-phosphorylated | activator | glnAp2 | Sigma54 | -89.0 | -162.0 | glnA, glnL, glnG |
ttggtgcaacATTCACATCGTGGTGCAgcccttttgc
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4058188 | 4058204 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [4], [5], [6], [7] | |
NtrC-phosphorylated | activator | glnAp2 | Sigma54 | -68.0 | -141.0 | glnA, glnL, glnG |
ggtgcagcccTTTTGCACGATGGTGCGcatgataacg
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4058167 | 4058183 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION] | W | [3], [5] | |
NtrC-phosphorylated | activator | glnAp2 | Sigma54 | -45.0 | -118.0 | glnA, glnL, glnG |
tgcgcatgatAACGCCTTTTAGGGGCAatttaaaagt
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4058144 | 4058160 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [3], [5] | |
NtrC-phosphorylated | repressor | glnHp2 | Sigma54 | -135.0 | -178.0 | glnH, glnP, glnQ |
ctgtgttgagTGCACAATTTTAGCGCAccagattggt
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848174 | 848190 | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [9] | |
NtrC-phosphorylated | activator | glnHp2 | Sigma54 | -122.0 | -165.0 | glnH, glnP, glnQ |
acaattttagCGCACCAGATTGGTGCCccagaatggt
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848161 | 848177 | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [9] | |
NtrC-phosphorylated | activator | glnHp2 | Sigma54 | -109.0 | -152.0 | glnH, glnP, glnQ |
accagattggTGCCCCAGAATGGTGCAtcttcagggt
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848148 | 848164 | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [9] | |
NtrC-phosphorylated | repressor | glnHp2 | Sigma54 | -79.0 | -122.0 | glnH, glnP, glnQ |
tcagggtattGCCCTATAAATCGTGCAtcacgttttt
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848118 | 848134 | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [9] | |
NtrC-phosphorylated | activator | glnKp | Sigma54 | -87.0 | -129.0 | glnK, amtB |
taacgcactgTGCACTGTCATAGTGCGttttcatttt
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472461 | 472477 | [COMP-HINF-SIMILAR-TO-CONSENSUS] | nd | [10] | |
NtrC-phosphorylated | repressor | glnLp | Sigma70 | 3.0 | -30.0 | glnL, glnG |
aaagctataaTGCACTAAAATGGTGCAacctgttcag
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4056361 | 4056377 | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [11] | |
NtrC-phosphorylated | activator | nacp | Sigma54 | -152.0 | -197.0 | nac |
tattgggtaaTGAACCATCGTGGTGCAtaccctcctt
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2062122 | 2062138 | [COMP-HINF-SIMILAR-TO-CONSENSUS] | nd | [12] | |
NtrC-phosphorylated | activator | patAp | Sigma38 | -543.0 | -579.0 | patA |
atccgggtgaCGCACCATGTTGTGCGGCtgcccttgta
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3218907 | 3218924 | [EXP-IEP], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [13] | |
NtrC-phosphorylated | activator | patAp | Sigma38 | -193.0 | -229.0 | patA |
ttaattatctTGCCCAAAAATCAGGCAattattgccc
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3219257 | 3219273 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [14], [15] | |
NtrC-phosphorylated | activator | patAp | Sigma38 | -171.0 | -207.0 | patA |
aggcaattatTGCCCTGAAAACGTGCAtttgcgcagc
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3219279 | 3219295 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [14], [15] | |
NtrC-phosphorylated | activator | patAp2 | Sigma54 | -543.0 | -579.0 | patA |
atccgggtgaCGCACCATGTTGTGCGGCtgcccttgta
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3218907 | 3218924 | [EXP-IEP], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [13] | |
NtrC-phosphorylated | activator | patAp2 | Sigma54 | -193.0 | -229.0 | patA |
ttaattatctTGCCCAAAAATCAGGCAattattgccc
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3219257 | 3219273 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [14], [15] | |
NtrC-phosphorylated | activator | patAp2 | Sigma54 | -171.0 | -207.0 | patA |
aggcaattatTGCCCTGAAAACGTGCAtttgcgcagc
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3219279 | 3219295 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [14], [15] | |
NtrC-phosphorylated | activator | potFp1 | Sigma54 | nd | nd | potF, potG, potH, potI | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] | ||
NtrC-phosphorylated | activator | relAp4 | Sigma54 | nd | nd | relA | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [16] | ||
NtrC-phosphorylated | activator | rpoEp2b | Sigma70 | -33.5 | -208.5 | rseD, rpoE, rseA, rseB, rseC |
tttggtcagcATAGCATCATGTTGTGCGGataaacacct
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2710364 | 2710382 | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [17] | |
NtrC-phosphorylated | activator | rseDp | Sigma54 | -33.5 | -208.5 | rseD, rpoE, rseA, rseB, rseC |
tttggtcagcATAGCATCATGTTGTGCGGataaacacct
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2710364 | 2710382 | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [17] | |
NtrC-phosphorylated | activator | rutAp | Sigma54 | -145.0 | -160.0 | rutA, rutB, rutC, rutD, rutE, rutF, rutG |
ctcgaccttcTGCACTCTCATCGCGCAcagatgcatg
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1074163 | 1074179 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] | |
NtrC-phosphorylated | activator | rutAp | Sigma54 | -124.0 | -139.0 | rutA, rutB, rutC, rutD, rutE, rutF, rutG |
cgcgcacagaTGCATGTTTTATGTGCAactgttttga
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1074142 | 1074158 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] | |
NtrC-phosphorylated | activator | yeaGp1 | Sigma54 | nd | nd | yeaG, yeaH | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] | ||
NtrC-phosphorylated | activator | yhdWp | Sigma54 | -126.0 | -196.0 | yhdW, yhdX, yhdY, yhdZ |
gtaaatatttTGCGCCAAAATGTGGCGcatgtttcat
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3418838 | 3418854 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] | |
NtrC-phosphorylated | activator | yhdWp | Sigma54 | -96.0 | -166.0 | yhdW, yhdX, yhdY, yhdZ |
gtttcattttCGCACCATTGCGGGGCGctgtttttat
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3418868 | 3418884 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [1] |
Alignment and PSSM for NtrC TFBSs | ![]() |
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Aligned TFBS of NtrC |
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Sequence | |
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GATGCACCATTCTGGGGCAC | |
TAAGCACCATGTTGGTGCAA | |
GTTGCACCATTTTAGTGCAT | |
TTCGCACCATTGCGGGGCGC | |
AGTGCACAATTTTAGCGCAC | |
AATGCACGTTTTCAGGGCAA | |
ATTGCCTGATTTTTGGGCAA | |
GAAGCACTATATTGGTGCAA | |
AATGCCCGCTTTTGGTGCGC | |
GTTGCCCTGTTTCAGGGCAA | |
TGCGCCACATTTTGGCGCAA | |
GGGGCACCAATCTGGTGCGC | |
GATGCATGTTTTATGTGCAA | |
AACGCACTATGACAGTGCAC | |
AATGAACCATCGTGGTGCAT | |
GACGCACCATGTTGTGCGGC | |
ACTGCGCCATTCTGACGCAG | |
ATAACGCCTTTTAGGGGCAA | |
GTAGTGCAGTTTTGGTGCAA | |
TGTGCGCGATGAGAGTGCAG | |
GATGCACGATTTATAGGGCA | |
TTTGCACGATGGTGCGCATG | |
ATAGCATCATGTTGTGCGGA | |
GTTGCATTATTGTCCTGAAG | |
GCTGCACAAATGTTGATCAA | |
TTTGCGCCATCGTTGACATC | |
TTCACATCGTGGTGCAGCCC |
Position weight matrix (PWM). NtrC matrix-quality result |
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A 9 10 5 2 1 18 1 3 20 2 1 2 3 6 2 3 0 3 18 12 C 0 2 5 0 25 4 21 13 1 0 2 3 4 1 3 3 4 21 2 9 G 11 4 1 25 0 5 0 7 3 0 7 7 1 15 20 10 22 3 5 4 T 7 11 16 0 1 0 5 4 3 25 17 15 19 5 2 11 1 0 2 2 |
Consensus |
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; consensus.strict gttGCaCcaTtttgGgGCac ; consensus.strict.rc GTGCCCCAAAATGGTGCAAC ; consensus.IUPAC rwtGCaCsaTkktgGkGCam ; consensus.IUPAC.rc KTGCMCCAMMATSGTGCAWY ; consensus.regexp [ag][at]tGCaC[cg]aT[gt][gt]tgG[gt]GCa[ac] ; consensus.regexp.rc [GT]TGC[AC]CCA[AC][AC]AT[CG]GTGCA[AT][CT] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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