![]() ![]() |
Synonyms: OmpR, OmpR-phosphorylated |
Transcription factor | ![]() ![]() |
||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF conformation(s): |
|
||||||||||||||||||
Sensing class: | External-Two-component systems | ||||||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||||||
Gene name: | ompR | ||||||||||||||||||
Genome position: | 3535865-3536584 | ||||||||||||||||||
Length: | 720 bp / 239 aa | ||||||||||||||||||
Operon name: | ompR-envZ | ||||||||||||||||||
TU(s) encoding the TF: |
|
Regulon |
![]() ![]() |
||||||
---|---|---|---|---|---|---|---|
Regulated gene(s) | bolA, cadA, cadB, cadC, csgD, csgE, csgF, csgG, dtpA, ecnB, fadL, feoA, feoB, feoC, flhC, flhD, micF, nmpC, ompC, ompF, omrA, omrB, pgaA, pgaB, pgaC, pgaD, sra | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
Transcription related (5)
activator (5)
repressor (4)
membrane (4)
Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily) (4)
Read more >
|
||||||
Regulated operon(s) | bdm-sra, bolA, cadBA, cadC, csgDEFG, dtpA, ecnAB, fadL, feoABC, flhDC, micF, nmpC, ompC, ompF, omrA, omrB, pgaABCD | ||||||
First gene in the operon(s) | bolA, cadB, cadC, csgD, ecnB, fadL, feoA, flhD, micF, ompC, ompF, omrA, omrB, pgaA, sra, dtpA | ||||||
Simple and complex regulons | AcrR,CRP,FliZ,Fur,H-NS,HdfR,IHF,LrhA,MatA,OmpR,QseB,RcsAB,YjjQ AcrR,H-NS,HU,IHF,Lrp,MarA,OmpR,Rob,SoxS ArcA,CRP,FadR,OmpR,PhoP,Rob,ppGpp ArcA,CadC,GadE-RcsB,GadX,H-NS,Lrp,OmpR BasR,BolA,BtsR,CRP,CpxR,Cra,CsgD,FliZ,H-NS,IHF,MlrA,MqsA,OmpR,RcdA,RcsAB,RstA,ppGpp Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
![]() |
---|
Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence![]() |
LeftPos | RightPos | Growth Conditions | Evidence (Confirmed, Strong, Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
OmpR-phosphorylated | repressor | bolAp | Sigma38 | -47.5 | -85.5 | bolA |
aggacgaaacCTAAATATTTGTTGTTAAGCtgcaatggaa
|
454377 | 454396 | nd | [APIORCISFBSCS], [BPP] | [1] | |
OmpR-phosphorylated | repressor | bolAp1 | Sigma70 | -47.5 | -85.5 | bolA |
aggacgaaacCTAAATATTTGTTGTTAAGCtgcaatggaa
|
454377 | 454396 | nd | [APIORCISFBSCS], [BPP] | [1] | |
OmpR | repressor | cadBp | Sigma70 | nd | nd | cadB, cadA | nd | nd | nd | [GEA], [BPP] | [2] | ||
OmpR | repressor | cadCp | Sigma70 | nd | nd | cadC | nd | nd | nd | [GEA], [BPP] | [2] | ||
OmpR-phosphorylated | activator | csgDp1 | Sigma70 | -49.5 | -197.5 | csgD, csgE, csgF, csgG |
aatataacgaGTTACATTTAGTTACATGTTtaacacttga
|
1103384 | 1103403 | nd | [GEA], [APIORCISFBSCS], [BPP] | [3], [4], [5] | |
OmpR-phosphorylated | activator | csgDp3 | Sigma38 | -49.5 | -197.5 | csgD, csgE, csgF, csgG |
aatataacgaGTTACATTTAGTTACATGTTtaacacttga
|
1103384 | 1103403 | nd | [GEA], [APIORCISFBSCS], [BPP] | [3], [4], [5] | |
OmpR-phosphorylated | repressor | ecnBp | Sigma38 | 18.5 | -26.5 | ecnB |
tttgctatagGCAAACATAAATAACATTACctaaaaggaa
|
4376517 | 4376536 | nd | [APIORCISFBSCS] | [6] | |
OmpR-phosphorylated | repressor | fadLp | Sigma38 | -149.5 | -250.5 | fadL |
gataagtgacCGAAATCACACTTAAAAATGatctaaaaca
|
2461046 | 2461065 | nd | [APIORCISFBSCS], [SM] | ||
OmpR-phosphorylated | repressor | fadLp | Sigma38 | -60.5 | -161.5 | fadL |
atcgcgtttcTTAGATCATATTTGAAAAAAgatagaaaca
|
2461135 | 2461154 | nd | [GEA], [APIORCISFBSCS] | [7] | |
OmpR-phosphorylated | repressor | fadLp | Sigma38 | 69.5 | -32.5 | fadL |
gttacagcacGTAACATAGTTTGTATAAAAataaatcatt
|
2461264 | 2461283 | nd | [GEA], [APIORCISFBSCS] | [7] | |
OmpR-phosphorylated | repressor | fadLp | Sigma38 | 119.5 | 18.5 | fadL |
tcatgagccaGAAAACCCTGTTTACAAAGTctgctctcgc
|
2461314 | 2461333 | nd | [GEA], [APIORCISFBSCS] | [7] | |
OmpR-phosphorylated | activator | feoAp | Sigma70 | -178.0 | -284.0 | feoA, feoB, feoC |
ccggcaatatTTATCATTTCATTAACAACTgaaaccttaa
|
3539869 | 3539888 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [8] | |
OmpR-phosphorylated | repressor | flhDp | Sigma70 | -145.5 | -343.5 | flhD, flhC |
caaagtcatcGGGCATTATCTGAACATAAAacactatcaa
|
1978531 | 1978550 | nd | [APIORCISFBSCS] | ||
OmpR-phosphorylated | repressor | flhDp | Sigma70 | 18.5 | -180.5 | flhD, flhC |
tcgatttaggAAAAATCTTAGATAAGTGTAaagacccatt
|
1978368 | 1978387 | nd | [APIORCISFBSCS] | ||
OmpR-phosphorylated | activator | micFp1 | Sigma70 | -206.5 | -206.5 | micF |
atccaacacgAATATGATACTAAAACTTTTaagatgtttc
|
2312868 | 2312887 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [9], [10], [11], [12], [13] | |
OmpR-phosphorylated | activator | micFp1 | Sigma70 | -186.5 | -186.5 | micF |
taaaacttttAAGATGTTTCATTTATCGCTatagatgttt
|
2312888 | 2312907 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [9], [10], [11], [13], [14] | |
OmpR-phosphorylated | activator | micFp1 | Sigma70 | -165.5 | -165.5 | micF |
tttatcgctaTAGATGTTTCAAAATGTAAAtgcaagggaa
|
2312909 | 2312928 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [8], [9], [10], [11], [13], [14] | |
OmpR-phosphorylated | activator | micFp2 | Sigma38 | -206.5 | -206.5 | micF |
atccaacacgAATATGATACTAAAACTTTTaagatgtttc
|
2312868 | 2312887 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [9], [10], [11], [12], [13] | |
OmpR-phosphorylated | activator | micFp2 | Sigma38 | -186.5 | -186.5 | micF |
taaaacttttAAGATGTTTCATTTATCGCTatagatgttt
|
2312888 | 2312907 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [9], [10], [11], [13], [14] | |
OmpR-phosphorylated | activator | micFp2 | Sigma38 | -165.5 | -165.5 | micF |
tttatcgctaTAGATGTTTCAAAATGTAAAtgcaagggaa
|
2312909 | 2312928 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [8], [9], [10], [11], [13], [14] | |
OmpR-phosphorylated | repressor | nmpCp | nd | -45.5 | nd | nmpC |
aatcaaacgaGAAACCAAAACTTACATCTTgaaataatca
|
576906 | 576925 | nd | [APIORCISFBSCS], [SM] | [15] | |
OmpR-phosphorylated | activator | ompCp1 | Sigma70 | -88.5 | -169.5 | ompC |
ttcccttgcaTTTACATTTTGAAACATCTAtagcgataaa
|
2312909 | 2312928 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [8], [9], [10], [11], [13], [14], [16] | |
OmpR-phosphorylated | activator | ompCp1 | Sigma70 | -67.5 | -148.5 | ompC |
aaacatctatAGCGATAAATGAAACATCTTaaaagtttta
|
2312888 | 2312907 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [9], [10], [11], [13], [14], [16] | |
OmpR-phosphorylated | activator | ompCp1 | Sigma70 | -47.5 | -128.5 | ompC |
gaaacatcttAAAAGTTTTAGTATCATATTcgtgttggat
|
2312868 | 2312887 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [9], [10], [11], [12], [13], [16] | |
OmpR-phosphorylated | repressor | ompFp | Sigma70 | -370.5 | -480.5 | ompF |
cgatcatcctGTTACGGAATATTACATTGCaacatttacg
|
987453 | 987472 | nd | [GEA], [BPP] | [13], [16], [17], [18], [19] | |
OmpR-phosphorylated | activator | ompFp | Sigma70 | -90.5 | -200.5 | ompF |
ttccttaaatTTTACTTTTGGTTACATATTttttcttttt
|
987173 | 987192 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [10], [12], [13], [14], [20], [21], [22], [23] | |
OmpR-phosphorylated | activator | ompFp | Sigma70 | -70.5 | -180.5 | ompF |
gttacatattTTTTCTTTTTGAAACCAAATctttatcttt
|
987153 | 987172 | nd | [GEA], [APIORCISFBSCS], [BCE], [BPP], [SM] | [10], [12], [13], [14], [16], [20], [21], [22], [23], [24], [25] | |
OmpR-phosphorylated | repressor | ompFp | Sigma70 | -70.5 | -180.5 | ompF |
gttacatattTTTTCTTTTTGAAACCAAATctttatcttt
|
987153 | 987172 | nd | [GEA], [APIORCISFBSCS], [BCE], [BPP], [SM] | [10], [12], [13], [14], [16], [20], [21], [22], [23], [24], [25] | |
OmpR-phosphorylated | activator | ompFp | Sigma70 | -50.5 | -160.5 | ompF |
gaaaccaaatCTTTATCTTTGTAGCACTTTcacggtagcg
|
987133 | 987152 | nd | [GEA], [AIBSCS], [BPP], [SM] | [10], [12], [13], [14], [17], [18], [19], [20], [21], [22], [23], [24] | |
OmpR-phosphorylated | repressor | ompFp | Sigma70 | -50.5 | -160.5 | ompF |
gaaaccaaatCTTTATCTTTGTAGCACTTTcacggtagcg
|
987133 | 987152 | nd | [GEA], [AIBSCS], [BPP], [SM] | [10], [12], [13], [14], [17], [18], [19], [20], [21], [22], [23], [24] | |
OmpR-phosphorylated | repressor | ompFp2 | Sigma38 | -370.5 | -480.5 | ompF |
cgatcatcctGTTACGGAATATTACATTGCaacatttacg
|
987453 | 987472 | nd | [GEA], [BPP] | [13], [16], [17], [18], [19] | |
OmpR-phosphorylated | activator | ompFp2 | Sigma38 | -90.5 | -200.5 | ompF |
ttccttaaatTTTACTTTTGGTTACATATTttttcttttt
|
987173 | 987192 | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [10], [12], [13], [14], [20], [21], [22], [23] | |
OmpR-phosphorylated | activator | ompFp2 | Sigma38 | -70.5 | -180.5 | ompF |
gttacatattTTTTCTTTTTGAAACCAAATctttatcttt
|
987153 | 987172 | nd | [GEA], [APIORCISFBSCS], [BCE], [BPP], [SM] | [10], [12], [13], [14], [16], [20], [21], [22], [23], [24], [25] | |
OmpR-phosphorylated | repressor | ompFp2 | Sigma38 | -70.5 | -180.5 | ompF |
gttacatattTTTTCTTTTTGAAACCAAATctttatcttt
|
987153 | 987172 | nd | [GEA], [APIORCISFBSCS], [BCE], [BPP], [SM] | [10], [12], [13], [14], [16], [20], [21], [22], [23], [24], [25] | |
OmpR-phosphorylated | activator | ompFp2 | Sigma38 | -50.5 | -160.5 | ompF |
gaaaccaaatCTTTATCTTTGTAGCACTTTcacggtagcg
|
987133 | 987152 | nd | [GEA], [AIBSCS], [BPP], [SM] | [10], [12], [13], [14], [17], [18], [19], [20], [21], [22], [23], [24] | |
OmpR-phosphorylated | repressor | ompFp2 | Sigma38 | -50.5 | -160.5 | ompF |
gaaaccaaatCTTTATCTTTGTAGCACTTTcacggtagcg
|
987133 | 987152 | nd | [GEA], [AIBSCS], [BPP], [SM] | [10], [12], [13], [14], [17], [18], [19], [20], [21], [22], [23], [24] | |
OmpR-phosphorylated | activator | omrAp | nd | -70.5 | -70.5 | omrA |
accgacaattTACACACCTCGTTGCATTTCccttcattcc
|
2976250 | 2976269 | nd | [GEA], [APIORCISFBSCS] | [26] | |
OmpR-phosphorylated | activator | omrBp | nd | -71.5 | -71.5 | omrB |
aaagagattgCAAACCTTTGGTTACACTTTgcgaaacgct
|
2976447 | 2976466 | nd | [GEA], [APIORCISFBSCS] | [26] | |
OmpR-phosphorylated | repressor | pgaAp | nd | -31.5 | -265.5 | pgaA, pgaB, pgaC, pgaD |
tgcatcggaaTTTACTGATTTAATTATTTTaatcctaatt
|
1092545 | 1092564 | nd | [GEA], [APIORCISFBSCS], [BPP] | [27] | |
OmpR-phosphorylated | repressor | srap | Sigma38 | nd | nd | sra | nd | nd | nd | [GEA], [BPP] | [28] | ||
OmpR-phosphorylated | activator | tppBp | Sigma70 | -45.5 | -143.5 | dtpA |
tcagttatatGTAACAGATTATTACAAAGGacttgtctga
|
1712616 | 1712635 | nd | [GEA], [BPP] | [29] |
Functional conformation | Function | Object name | Object type | Distance to first Gene | Sequence | LeftPos | RightPos | Center Position | Growth Condition | Evidence (Confirmed, Strong, Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
OmpR | activator | pdhR | gene | -147.5 |
ctttgaaacgTTATATATGTcaagttgtta
|
121940 | 121950 | 121944.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | pdhR | gene | -137.5 |
ttatatatgtCAAGTTGTTAaaatgtgcac
|
121950 | 121960 | 121954.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | gmhA | gene | -170.5 |
gtggatgtaaAAACATTTAGcaatatgttt
|
243368 | 243378 | 243372.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | fadE | gene | -69.5 |
gtggatgtaaAAACATTTAGcaatatgttt
|
243368 | 243378 | 243372.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | gmhA | gene | -160.5 |
aaacatttagCAATATGTTTacaatataat
|
243378 | 243388 | 243382.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | fadE | gene | -79.5 |
aaacatttagCAATATGTTTacaatataat
|
243378 | 243388 | 243382.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | acrR | gene | -37.5 |
acatacattcACAAATGTATgtaaatctaa
|
485719 | 485729 | 485723.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | acrR | gene | -27.5 |
acaaatgtatGTAAATCTAAcgcctgtaaa
|
485729 | 485739 | 485733.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | ybaN | gene | 5.0 |
acaacactcaATATGCAACGAATCATTTtaatcatcat
|
490879 | 490897 | 490887.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | copA | gene | -274.0 |
aaaagatgttAGATGCAAACAAATTACAgcaggcagtg
|
511645 | 511663 | 511653.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | rhtA | gene | -300.5 |
gagtttcccaTTAATTTTTGatatatttaa
|
850393 | 850403 | 850397.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | ompX | gene | -52.5 |
gagtttcccaTTAATTTTTGatatatttaa
|
850393 | 850403 | 850397.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | rhtA | gene | -310.5 |
ttaatttttgATATATTTAAaacttaggac
|
850403 | 850413 | 850407.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | ompX | gene | -42.5 |
ttaatttttgATATATTTAAaacttaggac
|
850403 | 850413 | 850407.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | ompF | gene | -159.0 |
gctaccgtgaAAGTGCTACAAAGATAAAgatttggttt
|
987133 | 987151 | 987141.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | ompF | gene | -189.0 |
tttggtttcaAAAAGAAAAAATATGTAAccaaaagtaa
|
987163 | 987181 | 987171.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | ompF | gene | -199.0 |
aaaagaaaaaATATGTAACCAAAAGTAAaatttaagga
|
987173 | 987191 | 987181.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | ymdF | gene | -328.0 |
ttccgtagcgATTCGCTACCACTTATTTaaagataaga
|
1067745 | 1067763 | 1067753.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | narU | gene | -166.5 |
aagtagccagATATGTGTTActaaatgtaa
|
1544222 | 1544232 | 1544226.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | narU | gene | -172.0 |
gtagccagatATGTGTTACTAAATGTAActaacaagct
|
1544224 | 1544242 | 1544232.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | narU | gene | -176.5 |
atatgtgttaCTAAATGTAActaacaagct
|
1544232 | 1544242 | 1544236.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | repressor | lpp | gene | -57.5 |
tcaacataaaAAACTTTGTGtaatacttgt
|
1757359 | 1757369 | 1757363.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | repressor | lpp | gene | -47.5 |
aaactttgtgTAATACTTGTaacgctacat
|
1757369 | 1757379 | 1757373.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | repressor | yobB | gene | -105.0 |
tacgagcccaAACTTAAATAAAACTTATacagagttac
|
1925327 | 1925345 | 1925335.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | flhD | gene | -179.0 |
atgggtctttACACTTATCTAAGATTTTtcctaaatcg
|
1978368 | 1978386 | 1978376.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | fliA | gene | -314.0 |
tctcagttaaTCAGGTTACAACGATTAAccctgcagca
|
2002095 | 2002113 | 2002103.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | ompC | gene | -127.0 |
tccaacacgaATATGATACTAAAACTTTtaagatgttt
|
2312868 | 2312886 | 2312876.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | ompC | gene | -168.0 |
ttatcgctatAGATGTTTCAAAATGTAAatgcaaggga
|
2312909 | 2312927 | 2312917.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | mntH | gene | -288.0 |
ttttccttaaCCATGTTACATAGAATGTgcacggaaat
|
2512986 | 2513004 | 2512994.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | nrdF | gene | -360.0 |
cttatatcaaCCATGCTACGTCGAGTATtcatccgatt
|
2803134 | 2803152 | 2803142.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | queE | gene | 81.0 |
aaccgggcatCCCTGTAAACGAATAAAAatggcgggaa
|
2905329 | 2905347 | 2905337.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | queE | gene | -105.0 |
ttaaagaaaaATGCGAAACATATCGTTAataattaaag
|
2905515 | 2905533 | 2905523.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | queE | gene | -188.0 |
tcatgtcaaaACATTCACCAAAATTATAtttatttttt
|
2905598 | 2905616 | 2905606.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | queE | gene | -229.0 |
tattagttttTAATGATAACGAATATAAaattaccgat
|
2905639 | 2905657 | 2905647.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | queE | gene | -269.0 |
cgccgtcaatTTATTTATCCAGATTTAAtgagaaattt
|
2905679 | 2905697 | 2905687.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | tolC | gene | -245.5 |
taatttctacATCGTTTTTGccaaatgtaa
|
3177865 | 3177875 | 3177869.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | tolC | gene | -235.5 |
atcgtttttgCCAAATGTAAcgggcaggtt
|
3177875 | 3177885 | 3177879.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | repressor | alx | gene | -203.0 |
atactttgttACCTGCAAAGGGGAGTAActtcattgcc
|
3238369 | 3238387 | 3238377.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | sraF | gene | 3.0 |
atactttgttACCTGCAAAGGGGAGTAActtcattgcc
|
3238369 | 3238387 | 3238377.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | sstT | gene | -65.5 |
aaacactttgTTACATCCTGaaagatgcgt
|
3239874 | 3239884 | 3239878.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | sstT | gene | -55.5 |
ttacatcctgAAAGATGCGTcgacagaacg
|
3239884 | 3239894 | 3239888.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | repressor | bfr | gene | -377.0 |
aataaaaataATGGGCTACCAAAAGTAGcccattgaca
|
3467094 | 3467112 | 3467102.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | tsgA | gene | -177.5 |
tacctaatttTACGTATCTGaaatatatgt
|
3492386 | 3492396 | 3492390.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | tsgA | gene | -167.5 |
tacgtatctgAAATATATGTaacctgacga
|
3492396 | 3492406 | 3492400.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | yhiD | gene | -104.0 |
cttgatttttGAAGGTATACAAATTTTTctgcgggttt
|
3655998 | 3656016 | 3656006.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | gadE | gene | -129.0 |
aagtattgatTAGTGTTAATAGACGTATtagttcacga
|
3658229 | 3658247 | 3658237.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | yhjE | gene | -181.0 |
cttttatttaACCTGAAACCAGTTTTATccactattta
|
3674597 | 3674615 | 3674605.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | ibpA | gene | -311.0 |
gatgaatttaTTATGATAAGAAATGTGTtgttagcgtt
|
3867725 | 3867743 | 3867733.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | glmZ | gene | -51.0 |
ttacagaattATCTCATAACAAGTGTTAagggatgtta
|
3986373 | 3986391 | 3986381.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | soxS | gene | -210.0 |
gattaccagtATCCGTAACAGCGGCAATcagcggcgat
|
4277585 | 4277603 | 4277593.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | ytfJ | gene | -198.0 |
attgtaacctTTAGGTAAAAAAAGTTATacgcggtgga
|
4439452 | 4439470 | 4439460.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | repressor | ytfK | gene | -127.0 |
attgtaacctTTAGGTAAAAAAAGTTATacgcggtgga
|
4439452 | 4439470 | 4439460.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | fecI | gene | -11.0 |
cagacatgcgGAGTGCATCAAAAGTTAAttatcacgta
|
4518238 | 4518256 | 4518246.0 | [1] | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [31] | |
OmpR | activator | rob | gene | -200.5 |
gtaatagataAAAATGGTAAcaatatgaaa
|
4635506 | 4635516 | 4635510.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | activator | rob | gene | -210.5 |
aaaatggtaaCAATATGAAAtacaagcatt
|
4635516 | 4635526 | 4635520.5 | nd | [AIBSCS], [CEEUMA], [RSE], [AIBSCS], [CEEUMA], [RSE] | [30] | |
OmpR | repressor | speF-potE | Transcription-Unit | nd |
(null)
|
nd | nd | nd | nd | [GEA], [BPP] | [2] | |
OmpR-phosphorylated | activator | sstT | Gene | nd | 3239875 | 3239895 | 3239884.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | rob | Gene | nd | 4635507 | 4635527 | 4635516.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | fadE | Gene | nd | 243369 | 243389 | 243378.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | acrR | Gene | nd | 485720 | 485740 | 485729.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | rhtA | Gene | nd | 850394 | 850414 | 850403.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | pdhR | Gene | nd | 121941 | 121961 | 121950.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | ompX | Gene | nd | 850394 | 850414 | 850403.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | gmhA | Gene | nd | 243369 | 243389 | 243378.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | tolC | Gene | nd | 3177866 | 3177886 | 3177875.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | tsgA | Gene | nd | 3492387 | 3492407 | 3492396.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | activator | narU | Gene | nd | 1544223 | 1544243 | 1544232.5 | nd | [EME], [AIBSPD], [GS] | [30] | ||
OmpR-phosphorylated | repressor | lpp | Gene | nd | 1757360 | 1757380 | 1757369.5 | nd | [EME], [AIBSPD], [GS] | [30] |
Growth Condition |
![]() |
---|
| C: Escherichia coli str. K-12 substr. MG1655| wild type| M9 minimal medium| sodium chloride 0.3 M; glucose 0.2%| aerobiosis| 37.0 C| mid exponential phase |
Alignment and PSSM for OmpR TFBSs | ![]() |
---|
Aligned TFBS of OmpR |
---|
Sequence | |
---|---|
AATATGTAACCAAAAGTAAAAT | |
AACATGTAACTAAATGTAACTC | |
AACGAGAAACCAAAACTTACAT | |
AAAGTGTAACCAAAGGTTTGCA | |
AATATGATACTAAAACTTTTAA | |
TATATGTAACAGATTATTACAA | |
TAGATGTTTCAAAATGTAAATG | |
ATCCTGTTACGGAATATTACAT | |
GAAATGCAACGAGGTGTGTAAA | |
AAAGTGCTACAAAGATAAAGAT | |
TATAGGCAAACATAAATAACAT | |
ATTTGGTTTCAAAAAGAAAAAA | |
AGCACGTAACATAGTTTGTATA | |
TACACTTATCTAAGATTTTTCC | |
TATCTTTTTTCAAATATGATCT | |
TGACCGAAATCACACTTAAAAA | |
GCAGCTTAACAACAAATATTTA | |
TTAAAATAATTAAATCAGTAAA | |
ACTTTGTAAACAGGGTTTTCTG | |
GGGCATTATCTGAACATAAAAC | |
TCTATAGCGATAAATGAAACAT |
Position weight matrix (PWM). OmpR matrix-quality result |
---|
A 10 12 6 11 3 2 3 14 15 3 6 17 16 15 8 6 4 10 13 8 13 9 C 0 3 5 4 4 0 3 1 0 15 7 0 2 0 2 3 0 0 0 7 3 3 G 3 3 2 4 2 15 1 0 1 0 2 3 2 5 2 7 0 4 0 2 0 2 T 8 3 8 2 12 4 14 6 5 3 6 1 1 1 9 5 17 7 8 4 5 7 |
Consensus |
---|
; consensus.strict aatatGtaaCcaaatgtaacaa ; consensus.strict.rc TTGTTACATTTGGTTACATATT ; consensus.IUPAC wayatGtaaCcaarwgtwwmaw ; consensus.IUPAC.rc WTKWWACWYTTGGTTACATRTW ; consensus.regexp [at]a[ct]atGtaaCcaa[ag][at]gt[at][at][ac]a[at] ; consensus.regexp.rc [AT]T[GT][AT][AT]AC[AT][CT]TTGGTTACAT[AG]T[AT] |
Evolutionary conservation of regulatory elements | ![]() |
---|
Reference(s) |
![]() |
---|---|