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CRP,FucR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
CRP Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Sensing Class Using internal synthesized signals
Synonym(s): Cap, Csm, DNA-binding transcriptional dual regulator CRP, GurB
Gene name(s): crp
Functional conformation(s): CRP-cAMP , CRP
Coregulator(s): AcrR, AdiY, AgaR, AraC, ArcA, ArgP, ArgR, AscG, BasR, BtsR, CRP, CaiF, ChbR, ComR, CpxR, Cra, CreB, CsgD, CspA, CsqR, CusR, CytR, DcuR, DeoR, DgoR, DksA-ppGpp, DnaA, DpiA, DsdC, EbgR, EnvY, EvgA, ExuR, FNR, FadR, FeaR, FhlA, Fis, FlhDC, FliZ, FucR, Fur, GadE, GadW, GadX, GalR, GalS, GatR, GcvA, GlaR, GlcC, GlpR, GlrR, GntR, GutM, H-NS, HU, HdfR, HipB, HprR, HyfR, HypT, IHF, IclR, IdnR, LacI, LeuO, LexA, LrhA, Lrp, LsrR, MalI, MalT, MarA, MarR, MatA, McbR, MelR, MetJ, MhpR, Mlc, MlrA, ModE, MprA, MqsA, MurR, Nac, NadR, NagC, NanR, NarL, NarP, NrdR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PhoB, PhoP, PrpR, PurR, PuuR, QseB, RbsR, RcdA, RcsB, RhaR, RhaS, Rob, RstA, SdiA, SlyA, SoxR, SoxS, SrlR, StpA, TdcA, TdcR, TorR, TreR, UhpA, UidR, UlaR, UvrY, UxuR, XylR, YdeO, YiaJ, YjjQ, ZraR, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
FucR      Tractordb tool
Connectivity class Local Regulator
Sensing Class External sensing using transported metabolites
Synonym(s): DNA-binding transcriptional activator FucR
Gene name(s): fucR
Functional conformation(s): FucR , FucR-L-fuculose-1-P
Coregulator(s): CRP, FucR
Summary: TF Summary ...[more]

REGULATION EXERTED BY CRP,FucR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
CRP activator FucR activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
CRP-cAMP activator fucPp fucP , fucI , fucK , fucU , fucR 2934028 2934049 -80.5 tttcgattatTAAAGTGATGGTAGTCACATAAagtcaccttc [AIBSCS]
[BPP]
[GEA]
[1]
[2]
CRP-cAMP activator fucPp fucP , fucI , fucK , fucU , fucR 2934068 2934089 -40.5 tctagctaatAAGTGTGACCGCCGTCATATTAcagagcgttt [BPP]
[GEA]
[SM]
[1]
[3]
CRP-cAMP activator fucAp fucO , fucA         [AIBSCS]
[GEA]
[IMP]
[2]
[3]
FucR-L-fuculose-1-P activator fucPp fucP , fucI , fucK , fucU , fucR         [GEA] [1]
[3]
FucR-L-fuculose-1-P activator fucAp fucO , fucA         [GEA]
[IMP]
[1]
[3]

Evidence: [AIBSCS] Automated inference based on similarity to consensus sequences
[BPP] Binding of purified proteins
[GEA] Gene expression analysis
[SM] Site mutation
[IMP] Inferred from mutant phenotype
Reference(s): [1] Podolny V., et al., 1999
[2] Zheng D., et al., 2004
[3] Zhu Y., et al., 1988



Reference(s)    

 [1] Podolny V., Lin EC., Hochschild A., 1999, A cyclic AMP receptor protein mutant that constitutively activates an Escherichia coli promoter disrupted by an IS5 insertion., J Bacteriol 181(24):7457-63

 [2] Zheng D., Constantinidou C., Hobman JL., Minchin SD., 2004, Identification of the CRP regulon using in vitro and in vivo transcriptional profiling., Nucleic Acids Res 32(19):5874-93

 [3] Zhu Y., Lin EC., 1988, A mutant crp allele that differentially activates the operons of the fuc regulon in Escherichia coli., J Bacteriol 170(5):2352-8


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