RegulonDB RegulonDB 10.6.3: Regulon Form
   
   


ArcA,McbR,RcdA,SdiA,SlyA regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
ArcA Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Sensing Class External-Two-component systems
Synonym(s): ArcA response regulator, CpxC, DNA-binding transcriptional dual regulator ArcA, Dye, FexA, Msp, Seg, SfrA, dye resistance protein
Gene name(s): arcA
Functional conformation(s): ArcA-Phosphorylated , ArcA
Coregulator(s): AdiY, AppY, ArcA, BetI, CRP, CadC, CaiF, Cra, CusR, CysB, DcuR, DksA-ppGpp, DnaA, DpiA, FNR, FadR, Fis, FlhDC, Fur, GadE, GadW, GadX, GatR, GlcC, GlpR, H-NS, HipB, HprR, HypT, IHF, IclR, IscR, LexA, LldR, Lrp, MarA, McbR, Mlc, ModE, MqsA, NarL, NarP, NsrR, NtrC, OmpR, PdhR, PhoP, PuuR, RcdA, RcsB, RhaS, Rob, RutR, SdiA, SlyA, SoxR, SoxS, TorR, TreR, YdeO, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
SdiA      Tractordb tool
Connectivity class Local Regulator
Sensing Class External sensing using transported metabolites
Synonym(s): DNA-binding transcriptional dual regulator SdiA
Gene name(s): sdiA
Functional conformation(s): SdiA
Coregulator(s): ArcA, CRP, GadW, GadX, H-NS, McbR, PhoP, RcdA, SdiA, SlyA, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
SlyA Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional dual regulator SlyA
Gene name(s): slyA
Functional conformation(s): SlyA
Coregulator(s): ArcA, CRP, FNR, Fis, Fur, H-NS, IHF, LeuO, LrhA, McbR, PaaX, PhoP, RcdA, SdiA, SlyA, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
McbR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional dual regulator McbR, YncC
Gene name(s): mcbR
Functional conformation(s): McbR
Coregulator(s): ArcA, CRP, H-NS, McbR, RcdA, SdiA, SlyA, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
RcdA Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional regulator RcdA, YbjK
Gene name(s): rcdA
Functional conformation(s): RcdA
Coregulator(s): ArcA, BasR, CRP, CpxR, Cra, CsgD, FliZ, H-NS, IHF, LexA, McbR, MlrA, MqsA, OmpR, PhoB, RcdA, RcsB, RstA, SdiA, SlyA, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY ArcA,McbR,RcdA,SdiA,SlyA Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
ArcA repressor McbR activator RcdA activator SdiA activator SlyA activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
RcdA activator rsdp2 rsd         [BPP]
[GEA]
[GS]
[1]
SlyA activator rsdp2 rsd         [BPP]
[GEA]
[GS]
[1]
McbR activator rsdp2 rsd         [BPP]
[GEA]
[GS]
[1]
ArcA-Phosphorylated repressor rsdp2 rsd         [BPP]
[GEA]
[GS]
[1]
SdiA activator rsdp2 rsd         [BPP]
[GEA]
[GS]
[1]

Evidence: [BPP] Binding of purified proteins
[GEA] Gene expression analysis
[GS] genomic SELEX
Reference(s): [1] Yoshida H., et al., null



Reference(s)    

 [1] Yoshida H., Shimada T., Ishihama A., null, Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of Escherichia coli to Stationary Phase., mSystems 3(5)


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