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Fur,MntR,OxyR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
OxyR Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class Using internal synthesized signals
Synonym(s): DNA-binding transcriptional dual regulator OxyR, MomR, Mor, bifunctional regulatory protein sensor for oxidative stress
Gene name(s): oxyR
Functional conformation(s): OxyR
Coregulator(s): CRP, ExuR, FNR, Fis, Fur, H-NS, IHF, IscR, MarA, MetJ, MetR, MntR, NarL, NarP, NsrR, OxyR, Rob, SoxS, UxuR, Zur
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
MntR Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): MntR-Mn2+ DNA-binding transcriptional dual regulator
Gene name(s): mntR
Functional conformation(s): MntR-Cd2+ , MntR , MntR-Mn2+
Coregulator(s): Fis, Fur, H-NS, IHF, MntR, OxyR
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
Fur Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class External sensing using transported metabolites
Synonym(s): DNA-binding transcriptional dual regulator Fur
Gene name(s): fur
Functional conformation(s): Fur-Fe2+ , Fur-Mn2+ , Fur
Coregulator(s): AcrR, AdiY, ArcA, ArgP, ArgR, CRP, CdaR, CpxR, Cra, CusR, EnvY, FNR, Fis, FliZ, Fur, GadE, GadX, H-NS, HdfR, HprR, HypT, IHF, IscR, LrhA, Lrp, MarA, MatA, MetR, MntR, ModE, MqsA, Nac, NagC, NfeR, NrdR, NsrR, NtrC, OmpR, OxyR, PdhR, PhoB, PurR, QseB, RcnR, RcsB, Rob, RstA, RutR, SlyA, SoxR, SoxS, YjjQ, Zur, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY Fur,MntR,OxyR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
Fur repressor MntR repressor OxyR activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
OxyR activator mntHp mntH 2512780 2512796 -54.0 ctatcagagaAATCACCACAATCCATTtaaatgaatt [AIBSCS]
[GEA]
[SM]
[1]
[2]
MntR-Mn2+ repressor mntHp mntH 2512719 2512740 5.5 gcatagcatgAAACATAGCAAAGGCTATGTTTtagaggcaca [AIBSCS]
[BPP]
[GEA]
[2]
[3]
Fur-Fe2+ repressor mntHp mntH 2512757 2512775 -31.5 tccatttaaaTGAATTTGATAATCATTCTcgtttggcat [AIBSCS]
[HIBSCS]
[IGI]
[2]
[3]
OxyR activator mntHp mntH 2512802 2512818 -76.0 ttttcgtagtCATAATCCTGGTCTATCagagaaatca [CEUMA]
[GEA]
[HIBSCS]
[IHBCE]
[RE]
[SM]
[1]
[2]
[4]

Evidence: [AIBSCS] Automated inference based on similarity to consensus sequences
[GEA] Gene expression analysis
[SM] Site mutation
[BPP] Binding of purified proteins
[HIBSCS] Human inference based on similarity to consensus sequences
[IGI] Inferred from genetic interaction
[CEUMA] ChIP-exo evidence used in manual assertion
[IHBCE] Inferred by a human based on computational evidence
[RE] RNA-seq evidence
Reference(s): [1] Anjem A., et al., 2009
[2] Kehres DG., et al., 2002
[3] Patzer SI., et al., 2001
[4] Seo SW., et al., 2015



Reference(s)    

 [1] Anjem A., Varghese S., Imlay JA., 2009, Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli., Mol Microbiol 72(4):844-58

 [2] Kehres DG., Janakiraman A., Slauch JM., Maguire ME., 2002, Regulation of Salmonella enterica serovar Typhimurium mntH transcription by H(2)O(2), Fe(2+), and Mn(2+)., J Bacteriol 184(12):3151-8

 [3] Patzer SI., Hantke K., 2001, Dual repression by Fe(2+)-Fur and Mn(2+)-MntR of the mntH gene, encoding an NRAMP-like Mn(2+) transporter in Escherichia coli., J Bacteriol 183(16):4806-13

 [4] Seo SW., Kim D., Szubin R., Palsson BO., 2015, Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655., Cell Rep 12(8):1289-99


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