RegulonDB RegulonDB 10.6.3: Regulon Form
   
   


PgrR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
PgrR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional repressor PgrR, YcjZ
Gene name(s): pgrR
Functional conformation(s): PgrR
Coregulator(s): PgrR, TyrR
Summary: TF Summary ...[more]

REGULATION EXERTED BY PgrR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
PgrR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
PgrR repressor ycjYp6 mpaA , ymjC , ymjD , ycjY 1391953 1391967 113.5 gcaatctattAATCATTTAAATGATaggtctaatc [BPP]
[GEA]
[IGI]
[1]
[2]
PgrR repressor ycjGp ycjG         [BPP]
[GEA]
[IGI]
[1]
PgrR repressor ycjXp ycjX , ycjF , tyrR         [BPP]
[GEA]
[IGI]
[1]

Evidence: [BPP] Binding of purified proteins
[GEA] Gene expression analysis
[IGI] Inferred from genetic interaction
Reference(s): [1] Choi U., et al., 2016
[2] Shimada T., et al., 2013



Reference(s)    

 [1] Choi U., Park YH., Kim YR., Seok YJ., Lee CR., 2016, Increased expression of genes involved in uptake and degradation of murein tripeptide under nitrogen starvation in Escherichia coli., FEMS Microbiol Lett 363(14)

 [2] Shimada T., Yamazaki K., Ishihama A., 2013, Novel regulator PgrR for switch control of peptidoglycan recycling in Escherichia coli., Genes Cells 18(2):123-34


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