RegulonDB RegulonDB 10.6.3: Regulon Form
   
   


NimR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
NimR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional repressor NimR, YeaM
Gene name(s): nimR
Functional conformation(s): NimR
Coregulator(s): NimR
Summary: TF Summary ...[more]

REGULATION EXERTED BY NimR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
NimR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
NimR repressor nimTp nimT 1875649 1875667 1.5 aaggtacagcCTCGTTTGTAACAATGAGAagcatatgac [BPP]
[GEA]
[GS]
[ICWHO]
[1]
[2]
NimR repressor nimTp nimT 1875574 1875595 -73.0 acctgtgcatCATTTTGTCCGAACTTAGCGATaatttgtcat [BPP]
[GEA]
[GS]
[ICWHO]
[1]
[2]
NimR repressor nimRp nimR 1875649 1875667 -57.5 gtcatatgctTCTCATTGTTACAAACGAGgctgtacctt [BPP]
[GEA]
[GS]
[ICWHO]
[1]
[2]
NimR repressor nimRp nimR 1875574 1875595 17.0 atgacaaattATCGCTAAGTTCGGACAAAATGatgcacaggt [BPP]
[GEA]
[GS]
[ICWHO]
[1]
[2]
NimR repressor nimRp nimR 1875623 1875637 -29.5 ctgtaccttaCCGTTTTTATTGTTAtgttgaatca [BPP]
[GEA]
[GS]
[ICWHO]
[1]
[2]
NimR repressor nimTp nimT 1875623 1875637 -27.5 tgattcaacaTAACAATAAAAACGGtaaggtacag [BPP]
[GEA]
[GS]
[ICWHO]
[1]
[2]

Evidence: [BPP] Binding of purified proteins
[GEA] Gene expression analysis
[GS] genomic SELEX
[ICWHO] Inferred computationally without human oversight
Reference(s): [1] Ogasawara H., et al., 2015
[2] Shimada T., et al., 2018



Reference(s)    

 [1] Ogasawara H., Ohe S., Ishihama A., 2015, Role of transcription factor NimR (YeaM) in sensitivity control of Escherichia coli to 2-nitroimidazole., FEMS Microbiol Lett 362(1):1-8

 [2] Shimada T., Ogasawara H., Ishihama A., 2018, Single-target regulators form a minor group of transcription factors in Escherichia coli K-12., Nucleic Acids Res 46(8):3921-3936


RegulonDB