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CecR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
CecR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional dual regulator CecR, YbiH
Gene name(s): cecR
Functional conformation(s): CecR
Coregulator(s): CecR
Summary: TF Summary ...[more]

REGULATION EXERTED BY CecR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
CecR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
CecR repressor cecRp ybhR , ybhS , ybhF , ybhG , cecR 830658 830678 2.5 gagtcataatCTTAATCAATCATTTGATTAAgaatggactg [BPP]
[GEA]
[GS]
[HIBSCS]
[1]
[2]

Evidence: [BPP] Binding of purified proteins
[GEA] Gene expression analysis
[GS] genomic SELEX
[HIBSCS] Human inference based on similarity to consensus sequences
Reference(s): [1] Shimada T., et al., 2018
[2] Yamanaka Y., et al., 2016



Reference(s)    

 [1] Shimada T., Ogasawara H., Ishihama A., 2018, Single-target regulators form a minor group of transcription factors in Escherichia coli K-12., Nucleic Acids Res 46(8):3921-3936

 [2] Yamanaka Y., Shimada T., Yamamoto K., Ishihama A., 2016, Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol., Microbiology 162(7):1253-64


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