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AsnC,Nac regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
Nac Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional dual regulator Nac
Gene name(s): nac
Functional conformation(s): Nac
Coregulator(s): AdiY, ArgP, ArgR, AsnC, CRP, CytR, FNR, Fur, GadE, HdfR, IHF, Lrp, Nac, NsrR, NtrC, PhoB, PurR, QseB
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
AsnC Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class Sensing external and internal signals
Synonym(s): DNA-binding transcriptional dual regulator AsnC
Gene name(s): asnC
Functional conformation(s): AsnC , AsnC-L-asparagine
Coregulator(s): AsnC, Nac
Summary: TF Summary ...[more]

REGULATION EXERTED BY AsnC,Nac Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
AsnC repressor Nac repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
Nac repressor asnCp mnmG , mioC , asnC 3927009 3927023 16.0 atgaatcatcAATCCGCATAAGAAAatcctatgga [APIORCISFBSCS]
[CV(GEA/ROMA)]
[GEA]
[1]
Nac repressor asnCp mnmG , mioC , asnC 3927088 3927102 -64.0 aaaccgacacACATGCAATAATCATtcaataaaaa [APIORCISFBSCS]
[CV(GEA/ROMA)]
[GEA]
[1]
Nac repressor asnCp mnmG , mioC , asnC 3927031 3927045 -7.0 taaaaaagaaGGCTAAAATAGAATGaatcatcaat [APIORCISFBSCS]
[CV(GEA/ROMA)]
[GEA]
[1]
AsnC repressor asnCp mnmG , mioC , asnC 3927110 3927123 -85.5 ttgcttatgaTTAAGCAACAAAAAccgacacaca [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[2]
AsnC repressor asnCp mnmG , mioC , asnC 3927079 3927092 -54.5 acatgcaataATCATTCAATAAAAagcctaactc [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[2]
AsnC repressor asnCp mnmG , mioC , asnC 3927047 3927060 -22.5 tcacttttgaTTCATTAAAAAAGAaggctaaaat [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[2]
AsnC repressor asnCp mnmG , mioC , asnC 3927013 3927026 12.5 agaatgaatcATCAATCCGCATAAgaaaatccta [AIBSCS]
[CV(GEA/ROMA)]
[GEA]
[2]

Evidence: [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.
[CV(GEA/ROMA)] cross validation(GEA/ROMA)
[GEA] Gene expression analysis
[AIBSCS] Automated inference based on similarity to consensus sequences
Reference(s): [1] Poggio S., et al., 2002
[2] Kolling R., et al., 1985



Reference(s)    

 [1] Poggio S., Domeinzain C., Osorio A., Camarena L., 2002, The nitrogen assimilation control (Nac) protein represses asnC and asnA transcription in Escherichia coli., FEMS Microbiol Lett 206(2):151-6

 [2] Kolling R., Lother H., 1985, AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli., J Bacteriol 164(1):310-5


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