RegulonDB

TRANSCRIPTION FACTOR:

Name:

CpxR	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Sensing Class

External-Two-component systems

Synonym(s):

CpxR response regulator, DNA-binding transcriptional dual regulator CpxR, YiiA

Gene name(s):

cpxR

Functional conformation(s):

CpxR , CpxR-Phosphorylated

Coregulator(s):

AcrR, BaeR, BasR, BtsR, CRP, CpxR, Cra, CsgD, CysB, EnvY, Fis, FliZ, Fur, GadE, H-NS, IHF, Lrp, MarA, MarR, MlrA, MqsA, NsrR, OmpR, PdhR, PhoB, RcdA, RcsAB, RcsB, Rob, RstA, SoxS, TyrR, YjjQ, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

CRP	Weight Matrix Tractordb tool

Connectivity class

Global Regulator

Sensing Class

Using internal synthesized signals

Synonym(s):

Cap, Csm, DNA-binding transcriptional dual regulator CRP, GurB

Gene name(s):

crp

Functional conformation(s):

CRP , CRP-cAMP

Coregulator(s):

AcrR, AdiY, AgaR, AraC, ArcA, ArgP, ArgR, AscG, BasR, BtsR, CRP, CRP-Sxy, CaiF, ChbR, ComR, CpxR, Cra, CreB, CsgD, CspA, CsqR, CusR, CytR, DcuR, DeoR, DgoR, DksA-ppGpp, DnaA, DpiA, DsdC, EbgR, EnvY, EvgA, ExuR, FNR, FadR, FeaR, FhlA, Fis, FlhDC, FliZ, FucR, Fur, GadE, GadE-RcsB, GadW, GadX, GalR, GalS, GatR, GcvA, GlaR, GlcC, GlpR, GlrR, GntR, GutM, H-NS, HU, HdfR, HipB, HprR, HyfR, HypT, IHF, IclR, IdnR, LacI, LeuO, LexA, LrhA, Lrp, LsrR, MalI, MalT, MarA, MarR, MatA, McbR, MelR, MetJ, MhpR, Mlc, MlrA, ModE, MprA, MqsA, MurR, Nac, NadR, NagC, NanR, NarL, NarP, NrdR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PhoB, PhoP, PrpR, PurR, PuuR, QseB, RbsR, RcdA, RcsAB, RcsB, RcsB-BglJ, RhaR, RhaS, Rob, RstA, SdiA, SlyA, SoxR, SoxS, SrlR, StpA, TdcA, TdcR, TorR, TreR, UhpA, UidR, UlaR, UvrY, UxuR, XylR, YdeO, YiaJ, YjjQ, ZraR, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

H-NS	Tractordb tool

Connectivity class

Global Regulator

Sensing Class

TFs for DNA-bending

Synonym(s):

BglY, Cur, DNA-binding protein HLP-II (HU, BH2, HD, NS), DNA-binding transcriptional dual regulator H-NS, Drc, DrdX, Drs, FimG, Hns, HnsA, Irk, MsyA, OsmZ, PilG, TopS, TopX, VirR

Gene name(s):

hns

Functional conformation(s):

H-NS

Coregulator(s):

AcrR, AdiY, ArcA, ArgP, ArgR, BasR, BtsR, CRP, CadC, CaiF, CdaR, CpxR, Cra, CsgD, CspA, CysB, DksA, DksA-ppGpp, DnaA, DpiA, EvgA, FNR, Fis, FlhDC, FliZ, Fur, GadE, GadE-RcsB, GadW, GadX, GalR, GalS, GlaR, GutM, H-NS, HU, HdfR, HypT, IHF, LacI, LeuO, LrhA, Lrp, MarA, MatA, McbR, MlrA, MntR, MqsA, NagC, NanR, NarL, NarP, NhaR, NrdR, NsrR, OmpR, OxyR, PhoB, PhoP, QseB, RcdA, RcsAB, RcsB, RcsB-BglJ, Rob, RstA, RutR, SdiA, SlyA, SoxS, SrlR, StpA, SutR, TorR, UvrY, YdeO, YjjQ, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

Cra	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Sensing Class

Using internal synthesized signals

Synonym(s):

DNA-binding transcriptional dual regulator Cra, FruC, FruR, Shl

Gene name(s):

cra

Functional conformation(s):

Cra-;-D-fructose 1,6-bisphosphate , Cra-β-D-fructose 1,6-bisphosphate , Cra , Cra-β-D-fructofuranose 1-phosphate

Coregulator(s):

AcrR, ArcA, BasR, BetI, BtsR, CRP, CpxR, Cra, CsgD, CusR, DcuR, DksA, FNR, Fis, FliZ, Fur, GadE, GlcC, GntR, H-NS, HprR, IHF, IclR, KdgR, Lrp, MarA, MarR, Mlc, MlrA, MqsA, NagC, NarL, NarP, OmpR, PdhR, PrpR, RcdA, RcsAB, Rob, RstA, SgrR, SoxS, TyrR, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

CsgD	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Synonym(s):

DNA-binding transcriptional dual regulator CsgD

Gene name(s):

csgD

Functional conformation(s):

CsgD

Coregulator(s):

BasR, BtsR, CRP, CpxR, Cra, CsgD, DksA-ppGpp, FlhDC, FliZ, H-NS, IHF, MatA, MlrA, MqsA, NsrR, OmpR, RcdA, RcsAB, RstA, SutR, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

RstA	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Sensing Class

External-Two-component systems

Synonym(s):

DNA-binding transcriptional regulator RstA, RstA response regulator, UrpT

Gene name(s):

rstA

Functional conformation(s):

RstA , RstA-Phosphorylated

Coregulator(s):

BasR, BtsR, CRP, CpxR, Cra, CsgD, EnvY, FNR, Fis, FliZ, Fur, H-NS, IHF, MlrA, MqsA, NarL, OmpR, PhoB, RcdA, RcsAB, RstA, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

MqsA	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Synonym(s):

YgiT, antitoxin of the MqsRA toxin-antitoxin system / DNA-binding transcriptional repressor MqsA

Gene name(s):

mqsA

Functional conformation(s):

MqsA

Coregulator(s):

ArcA, BasR, BtsR, CRP, CpxR, Cra, CsgD, FliZ, Fur, GadX, H-NS, IHF, MlrA, MqsA, OmpR, RcdA, RcsAB, RstA, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

MlrA	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Synonym(s):

DNA-binding transcriptional activator MlrA, YehV

Gene name(s):

mlrA

Functional conformation(s):

MlrA

Coregulator(s):

BasR, BtsR, CRP, CadC, CpxR, Cra, CsgD, DksA-ppGpp, FNR, FliZ, H-NS, IHF, LeuO, MlrA, MqsA, OmpR, RcdA, RcsAB, RstA, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

FliZ	Tractordb tool

Connectivity class

Local Regulator

Synonym(s):

DNA-binding transcriptional regulator FliZ, YedH

Gene name(s):

fliZ

Functional conformation(s):

FliZ

Coregulator(s):

AcrR, AdiY, BasR, BtsR, CRP, CpxR, Cra, CsgD, EvgA, Fis, FliZ, Fur, GadE, GadW, GadX, H-NS, HdfR, IHF, LrhA, Lrp, MarA, MatA, MlrA, MqsA, OmpR, PhoP, QseB, RcdA, RcsAB, RcsB, RstA, RutR, TorR, YdeO, YjjQ, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

BtsR	Tractordb tool

Connectivity class

Local Regulator

Sensing Class

External-Two-component systems

Synonym(s):

DNA-binding transcriptional dual regulator BtsR, YehT

Gene name(s):

btsR

Functional conformation(s):

BtsR , BtsR-Phosphorylated

Coregulator(s):

ArcA, BasR, BtsR, CRP, CpxR, Cra, CsgD, DpiA, FNR, FlhDC, FliZ, H-NS, IHF, MlrA, MqsA, OmpR, PdhR, RcdA, RcsAB, RstA, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

BasR	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Sensing Class

External-Two-component systems

Synonym(s):

BasR response regulator, DNA-binding transcriptional dual regulator BasR, PmrA

Gene name(s):

basR

Functional conformation(s):

BasR , BasR-Phosphorylated

Coregulator(s):

BasR, BtsR, CRP, CpxR, Cra, CsgD, DksA, DksA-ppGpp, Fis, FliZ, H-NS, IHF, MarA, MlrA, MqsA, NagC, NanR, OmpR, PdhR, PhoP, PutA, QseB, RcdA, RcsAB, RstA, SoxR, SoxS, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

RcdA	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Synonym(s):

DNA-binding transcriptional regulator RcdA, YbjK

Gene name(s):

rcdA

Functional conformation(s):

RcdA

Coregulator(s):

ArcA, BasR, BtsR, CRP, CpxR, Cra, CsgD, FliZ, H-NS, IHF, LexA, McbR, MlrA, MqsA, OmpR, PhoB, RcdA, RcsAB, RstA, SdiA, SlyA, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

IHF	Weight Matrix Tractordb tool

Connectivity class

Global Regulator

Sensing Class

TFs for DNA-bending

Synonym(s):

DNA-binding transcriptional dual regulator IHF

Gene name(s):

ihfB, ihfA

Functional conformation(s):

IHF

Coregulator(s):

AcrR, AdiY, ArcA, ArgR, AtoC, BasR, BtsR, CRP, Cbl, CpxR, Cra, CsgD, CysB, DksA, DksA-ppGpp, EnvY, FNR, FadR, FhlA, Fis, FlhDC, FliZ, Fur, GadE, GlcC, GlpR, GlrR, H-NS, HU, HdfR, HipAB, HipB, IHF, IclR, IscR, LrhA, Lrp, MarA, MatA, MlrA, MntR, ModE, MprA, MqsA, Nac, NagC, NanR, NarL, NarP, NorR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PepA, PhoB, PspF, PurR, QseB, RcdA, RcsAB, Rob, RstA, RtcR, RutR, SlyA, SoxR, SoxS, SutR, TdcA, TdcR, TrpR, TyrR, UlaR, UvrY, YeiL, YiaJ, YjjQ, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

RcsAB

Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Synonym(s):

RcsAB DNA-binding transcriptional dual regulator

Gene name(s):

rcsA, rcsB

Functional conformation(s):

RcsAB

Coregulator(s):

AcrR, BasR, BtsR, CRP, CpxR, Cra, CsgD, FliZ, Fur, GadE, H-NS, HdfR, IHF, LrhA, MatA, MlrA, MqsA, OmpR, QseB, RcdA, RcsAB, RstA, YjjQ, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

OmpR	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Sensing Class

External-Two-component systems

Synonym(s):

Cry, DNA-binding transcriptional dual regulator OmpR, Kmt, OmpB, OmpR response regulator

Gene name(s):

ompR

Functional conformation(s):

OmpR-P , OmpR

Coregulator(s):

AcrR, ArcA, BasR, BtsR, CRP, CadC, CpxR, Cra, CsgD, EnvY, FNR, FadR, Fis, FliZ, Fur, GadE-RcsB, GadX, H-NS, HU, HdfR, IHF, LeuO, LrhA, Lrp, MarA, MatA, MlrA, MprA, MqsA, NhaR, OmpR, PhoB, PhoP, QseB, RcdA, RcsAB, Rob, RstA, SoxS, YjjQ, ppGpp

REGULATION EXERTED BY BasR,BtsR,CRP,CpxR,Cra,CsgD,FliZ,H-NS,IHF,MlrA,MqsA,OmpR,RcdA,RcsAB,RstA,ppGpp

Info M3D | Colombos

KNOWN BINDING SITES (The central relative position is relative to the promoter +1)
BasR activator BtsR repressor CRP activator CpxR repressor Cra activator CsgD activator FliZ repressor H-NS repressor IHF activator MlrA activator MqsA repressor OmpR activator RcdA activator RcsAB repressor RstA repressor ppGpp activation
Transcription Factor		Regulated		Binding Sites				Evidence	References
Functional conformation	Function	Promoter	Gene(s)	LeftPos	RigthPos	Central Rel-Pos	Sequence
CRP-cAMP	activator	csgDp1	csgG , csgF , csgE , csgD	1103504	1103525	-170.5	tttatatgcaTTATTAGTAAGTTATCACCATTtgtatgattt	[AIBSCS] [CV(GEA)] [GEA]	[1]
CRP-cAMP	activator	csgDp1	csgG , csgF , csgE , csgD	1103376	1103397	-42.5	acgagttacaTTTAGTTACATGTTTAACACTTgatttaagat	[AIBSCS] [CV(GEA)] [GEA]	[2] [1]
OmpR-P	activator	csgDp1	csgG , csgF , csgE , csgD	1103384	1103403	-49.5	aatataacgaGTTACATTTAGTTACATGTTtaacacttga	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[3] [4] [5]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103437	1103451	-100.0	acttttctatCATTTCTAAACTTAAtaaaacctta	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[3] [4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103389	1103403	-52.0	aatataacgaGTTACATTTAGTTACatgtttaaca	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[3] [5]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103385	1103399	-48.0	taacgagttaCATTTAGTTACATGTttaacacttg	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[3]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103359	1103373	-21.5	taacacttgaTTTAAGATTTGTAATggctagattg	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[3] [4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103335	1103349	3.0	tggctagattGAAATCAGATGTAATccattagttt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[3]
RstA-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103388	1103402	-50.5	atataacgagTTACATTTAGTTACAtgtttaacac	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[6] [4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103523	1103537	-186.0	accgaaatatTTTTTATATGCATTAttagtaagtt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103516	1103529	-178.0	attttttataTGCATTATTAGTAAgttatcacca	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103503	1103517	-166.0	cattattagtAAGTTATCACCATTTgtatgatttt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103478	1103492	-141.0	gtatgattttTTAAAATTGTGCAATaaaaaccaaa	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103466	1103482	-129.5	ttaaaattgtGCAATAAAAACCAAATGtacaactttt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103446	1103460	-108.5	aaatgtacaaCTTTTCTATCATTTCtaaacttaat	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103433	1103447	-95.5	ttctatcattTCTAAACTTAATAAAaccttaaggt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103411	1103425	-73.5	aaaaccttaaGGTTAACATTTTAATataacgagtt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
CpxR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103380	1103394	-43.0	agttacatttAGTTACATGTTTAACacttgattta	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[4]
IHF	activator	csgDp1	csgG , csgF , csgE , csgD	1103503	1103533	-173.5	aaatatttttTATATGCATTATTAGTAAGTTATCACCATTTgtatgatttt	[BPP] [GEA]	[2] [4]
IHF	activator	csgDp1	csgG , csgF , csgE , csgD	1103381	1103441	-66.5	catttctaaaCTTAATAAAACCTTAAGGTTAACATTTTAATATAACGAGTTACATTTAGTTACATGTTTAAcacttgattt	[BPP] [GEA]	[4]
MlrA	activator	csgDp1	csgG , csgF , csgE , csgD	1103457	1103491	-129.5	tatgatttttTAAAATTGTGCAATAAAAACCAAATGTACAACTTTtctatcattt	[BPP] [GEA]	[7]
CsgD	activator	csgDp1	csgG , csgF , csgE , csgD	1103329	1103343	9.5	gattgaaatcAGATGTAATCCATTAgttttatatt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[8]
CsgD	activator	csgDp1	csgG , csgF , csgE , csgD	1103309	1103323	29.5	cattagttttATATTTTACCCATTTagggctgatt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[8]
CsgD	activator	csgDp1	csgG , csgF , csgE , csgD	1103504	1103518	-166.5	gcattattagTAAGTTATCACCATTtgtatgattt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[8]
CsgD	activator	csgDp1	csgG , csgF , csgE , csgD	1103456	1103470	-118.5	aataaaaaccAAATGTACAACTTTTctatcatttc	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[8]
Cra	activator	csgDp1	csgG , csgF , csgE , csgD	1103290	1103307	46.5	tacccatttaGGGCTGATTTATTACTACacacagcagt	[AIBSCS] [BPP] [CV(GEA)] [CV(GEA)] [CV(GEA/SM)] [CV(SM)] [GEA] [SM]	[9]
Cra	activator	csgDp1	csgG , csgF , csgE , csgD	1103532	1103549	-196.5	cgaaaggactACACCGAAATATTTTTTAtatgcattat	[AIBSCS] [BPP] [CV(GEA)] [CV(GEA)] [CV(GEA/SM)] [CV(SM)] [GEA] [SM]	[9]
Cra	activator	csgDp1	csgG , csgF , csgE , csgD	1103563	1103580	-227.5	tgtggagaaaAAACAAGAACGTTTTACAtgacgaaagg	[AIBSCS] [BPP] [CV(GEA)] [CV(GEA)] [CV(GEA/SM)] [CV(SM)] [GEA] [SM]	[9]
Cra	activator	csgDp1	csgG , csgF , csgE , csgD	1103899	1103916	-563.5	catttaagaaATTAAATCATTTCAACTTggttgttaac	[AIBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[9]
BasR-Phosphorylated	activator	csgDp1	csgG , csgF , csgE , csgD	1103425	1103444	-90.5	tatcatttctAAACTTAATAAAACCTTAAGgttaacattt	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[10]
RcdA	activator	csgDp1	csgG , csgF , csgE , csgD	1103638	1103648	-298.5	tgcgatatgtCTTGCGCACAAgccgtgacaa	[BPP] [CV(GEA)] [CV(GEA)] [GEA] [IC]	[11]
MqsA	repressor	csgDp1	csgG , csgF , csgE , csgD	1103421	1103434	-83.5	aaacttaataAAACCTTAAGGTTAacattttaat	[APIORCISFBSCS] [BPP] [CV(GEA)] [CV(GEA)] [GEA]	[12]
H-NS	repressor	csgDp1	csgG , csgF , csgE , csgD					[BPP] [GEA]	[4]
RcsAB	repressor	csgDp1	csgG , csgF , csgE , csgD					[GEA]	[13]
FliZ	repressor	csgDp1	csgG , csgF , csgE , csgD					[BPP] [GEA]	[14] [15]
BtsR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103303	1103314	37.0	tatattttacCCATTTAGGGCTgatttattac	[AIBSPD] [CV(GEA)] [CV(GEA)] [CV(GEA/GS)] [CV(GEA/GS)] [GEA] [GS]	[16]
BtsR-Phosphorylated	repressor	csgDp1	csgG , csgF , csgE , csgD	1103364	1103375	-25.0	tttaacacttGATTTAAGATTTgtaatggcta	[AIBSPD] [CV(GEA)] [CV(GEA)] [CV(GEA/GS)] [CV(GEA/GS)] [GEA] [GS]	[16]

Evidence:

[AIBSCS] Automated inference based on similarity to consensus sequences
[CV(GEA)] cross validation(GEA)
[GEA] Gene expression analysis
[APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.
[BPP] Binding of purified proteins
[CV(GEA/SM)] cross validation(GEA/SM)
[CV(SM)] cross validation(SM)
[SM] Site mutation
[IC] Inferred by curator
[AIBSPD] Automated inference based on sequence pattern discovery
[CV(GEA/GS)] cross validation(GEA/GS)
[GS] genomic SELEX

Reference(s):

[1] Zheng D., et al., 2004
[2] Amores GR., et al., 2017
[3] Jubelin G., et al., 2005
[4] Ogasawara H., et al., 2010
[5] Prigent-Combaret C., et al., 2001
[6] Ogasawara H., et al., 2007
[7] Ogasawara H., et al., 2010
[8] Ogasawara H., et al., 2011
[9] Reshamwala SM., et al., 2011
[10] Ogasawara H., et al., 2012
[11] Shimada T., et al., 2012
[12] Soo VW., et al., 2013
[13] Vianney A., et al., 2005
[14] Pesavento C., et al., 2008
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[16] Ogasawara H., et al., 2019

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