RegulonDB RegulonDB 10.8: Regulon Form
   
   


IHF,RcsAB regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
IHF Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Sensing Class TFs for DNA-bending
Synonym(s): DNA-binding transcriptional dual regulator IHF
Gene name(s): ihfB, ihfA
Functional conformation(s): IHF
Coregulator(s): AcrR, AdiY, ArcA, ArgR, AtoC, BasR, BtsR, CRP, Cbl, CpxR, Cra, CsgD, CysB, DksA, DksA-ppGpp, EnvY, FNR, FadR, FhlA, Fis, FlhDC, FliZ, Fur, GadE, GlcC, GlpR, GlrR, H-NS, HU, HdfR, HipAB, HipB, IHF, IclR, IscR, LrhA, Lrp, MarA, MatA, MlrA, MntR, ModE, MprA, MqsA, Nac, NagC, NanR, NarL, NarP, NorR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PepA, PhoB, PspF, PurR, QseB, RcdA, RcsAB, Rob, RstA, RtcR, RutR, SlyA, SoxR, SoxS, SutR, TdcA, TdcR, TrpR, TyrR, UlaR, UvrY, YeiL, YiaJ, YjjQ, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
RcsAB Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): RcsAB DNA-binding transcriptional dual regulator
Gene name(s): rcsA, rcsB
Functional conformation(s): RcsAB
Coregulator(s): AcrR, BasR, BtsR, CRP, CpxR, Cra, CsgD, FliZ, Fur, GadE, H-NS, HdfR, IHF, LrhA, MatA, MlrA, MqsA, OmpR, QseB, RcdA, RcsAB, RstA, YjjQ, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY IHF,RcsAB Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
IHF activator RcsAB activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
IHF activator yjbEp1 yjbE , yjbF , yjbG , yjbH 4235719 4235731 -133.0 tgtttttattTTAAGTTTATGATttttattgtt [APIORCISFBSCS]
[BPP]
[1]
RcsAB activator yjbEp1 yjbE , yjbF , yjbG , yjbH 4235642 4235656 -209.0 aatcataccgTGAGGTTAATCCTAAaatagatttt [APIORCISFBSCS]
[CV(GEA)]
[GEA]
[2]

Evidence: [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.
[BPP] Binding of purified proteins
[CV(GEA)] cross validation(GEA)
[GEA] Gene expression analysis
Reference(s): [1] Murtin C., et al., 1998
[2] Ferrieres L., et al., 2007



Reference(s)    

 [1] Murtin C., Engelhorn M., Geiselmann J., Boccard F., 1998, A quantitative UV laser footprinting analysis of the interaction of IHF with specific binding sites: re-evaluation of the effective concentration of IHF in the cell., J Mol Biol 284(4):949-61

 [2] Ferrieres L., Aslam SN., Cooper RM., Clarke DJ., 2007, The yjbEFGH locus in Escherichia coli K-12 is an operon encoding proteins involved in exopolysaccharide production., Microbiology 153(Pt 4):1070-80


RegulonDB