RegulonDB RegulonDB 10.8: Regulon Form
   
   


NemR,RutR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
RutR Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional dual regulator RutR, YcdC
Gene name(s): rutR
Functional conformation(s): RutR , RutR-thymine , RutR-uracil
Coregulator(s): ArcA, FNR, Fis, FliZ, Fur, GadE, GadW, GadX, H-NS, IHF, NemR, NtrC, PepA, PhoB, PhoP, PurR, RutR
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
NemR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional repressor NemR, YdhM
Gene name(s): nemR
Functional conformation(s): NemR-methylglyoxal , NemR
Coregulator(s): NemR, RutR
Summary: TF Summary ...[more]

REGULATION EXERTED BY NemR,RutR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
NemR repressor RutR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
NemR repressor nemRp nemR , nemA , gloA 1725993 1726009 -20.5 ttgcttgcacTAGACCGACTGGTCTACtacactccaa [AIBSCS]
[BPP]
[CV(GEA)]
[CV(GEA)]
[GEA]
[1]
RutR repressor nemRp nemR , nemA , gloA 1725993 1726009 -20.5 ttgcttgcacTAGACCGACTGGTCTACtacactccaa [AIBSCS]
[BPP]
[CV(GEA)]
[CV(GEA)]
[GEA]
[2]

Evidence: [AIBSCS] Automated inference based on similarity to consensus sequences
[BPP] Binding of purified proteins
[CV(GEA)] cross validation(GEA)
[GEA] Gene expression analysis
Reference(s): [1] Umezawa Y., et al., 2008
[2] Shimada T., et al., 2008



Reference(s)    

 [1] Umezawa Y., Shimada T., Kori A., Yamada K., Ishihama A., 2008, Uncharacterized Transcription Factor YdhM is the Regulator of the nemA Gene Encoding N-ethylmaleimide (NEM) Reductase., J Bacteriol 190(17):5890-7

 [2] Shimada T., Ishihama A., Busby SJ., Grainger DC., 2008, The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions., Nucleic Acids Res 36(12):3950-5


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