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RcdA regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
RcdA Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional regulator RcdA, YbjK
Gene name(s): rcdA
Functional conformation(s): RcdA
Coregulator(s): ArcA, BasR, BolA, BtsR, CRP, CpxR, Cra, CsgD, FliZ, H-NS, IHF, LexA, McbR, MlrA, MqsA, OmpR, PhoB, RcdA, RcsAB, RstA, SdiA, SlyA, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY RcdA Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
RcdA repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
RcdA repressor yagKp6 yagK 293111 293121 3.5 atataatggcATTGTGTACTCttactacctg   [1]
RcdA activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
RcdA activator bluFp bluF 1215713 1215723 -211.5 ttgtacgaaaTATGTGTACAGaatgataaat [GEA] [1]
RcdA activator bluFp bluF 1215724 1215734 -222.5 caatagcaaaCTTGTACGAAAtatgtgtaca [GEA] [1]
RcdA activator ydeIp5 ydeI

Evidence: [GEA] Gene expression analysis
Reference(s): [1] Shimada T., et al., 2012



Reference(s)    

 [1] Shimada T., Katayama Y., Kawakita S., Ogasawara H., Nakano M., Yamamoto K., Ishihama A., 2012, A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli., Microbiologyopen 1(4):381-94


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