RegulonDB

TRANSCRIPTION FACTOR:

Name:

RcdA	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Synonym(s):

DNA-binding transcriptional regulator RcdA, YbjK

Gene name(s):

rcdA

Functional conformation(s):

RcdA

Coregulator(s):

ArcA, BasR, BolA, BtsR, CRP, CpxR, Cra, CsgD, FliZ, H-NS, IHF, LexA, McbR, MlrA, MqsA, OmpR, PhoB, RcdA, RcsAB, RstA, SdiA, SlyA, ppGpp

Summary:

TF Summary ...[more]

REGULATION EXERTED BY RcdA

Info M3D | Colombos

KNOWN BINDING SITES (The central relative position is relative to the promoter +1)
RcdA repressor
Transcription Factor		Regulated		Binding Sites				Evidence	References
Functional conformation	Function	Promoter	Gene(s)	LeftPos	RigthPos	Central Rel-Pos	Sequence
RcdA	repressor	yagKp6	yagK	293111	293121	3.5	atataatggcATTGTGTACTCttactacctg		[1]
RcdA activator
Transcription Factor		Regulated		Binding Sites				Evidence	References
Functional conformation	Function	Promoter	Gene(s)	LeftPos	RigthPos	Central Rel-Pos	Sequence
RcdA	activator	bluFp	bluF	1215713	1215723	-211.5	ttgtacgaaaTATGTGTACAGaatgataaat	[GEA]	[1]
RcdA	activator	bluFp	bluF	1215724	1215734	-222.5	caatagcaaaCTTGTACGAAAtatgtgtaca	[GEA]	[1]
RcdA	activator	ydeIp5	ydeI

Evidence:	[GEA] Gene expression analysis
Reference(s):	[1] Shimada T., et al., 2012