RegulonDB

TRANSCRIPTION FACTOR:

Name:

CRP	Weight Matrix Tractordb tool

Connectivity class

Global Regulator

Sensing Class

Using internal synthesized signals

Synonym(s):

Cap, Csm, DNA-binding transcriptional dual regulator CRP, GurB

Gene name(s):

crp

Functional conformation(s):

CRP , CRP-cyclic-AMP

Coregulator(s):

AaeR, AcrR, AdiY, AgaR, AraC, ArcA, ArgP, ArgR, AscG, BasR, BolA, BtsR, CRP, CRP-Sxy, CaiF, ChbR, ComR, CpxR, Cra, CreB, CsgD, CspA, CsqR, CusR, CytR, DcuR, DeoR, DgoR, DksA-ppGpp, DnaA, DpiA, DsdC, EbgR, EnvY, EvgA, ExuR, FNR, FadR, FeaR, FhlA, Fis, FlhDC, FliZ, FrlR, FucR, Fur, GadE, GadE-RcsB, GadW, GadX, GalR, GalS, GatR, GcvA, GlaR, GlcC, GlpR, GlrR, GntR, GutM, H-NS, HU, HdfR, HipB, HprR, HyfR, HypT, IHF, IclR, IdnR, LacI, LeuO, LexA, LrhA, Lrp, LsrR, MalI, MalT, MarA, MarR, MatA, McbR, MelR, MetJ, MhpR, Mlc, MlrA, ModE, MprA, MqsA, MurR, Nac, NadR, NagC, NanR, NarL, NarP, NrdR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PhoB, PhoP, PlaR, PrpR, PurR, PuuR, QseB, RbsR, RcdA, RcsAB, RcsB, RcsB-BglJ, RhaR, RhaS, Rob, RspR, RstA, SdiA, SlyA, SoxR, SoxS, SrlR, StpA, TdcA, TdcR, TorR, TreR, UhpA, UidR, UlaR, UvrY, UxuR, XylR, YdeO, YjjQ, ZraR, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

AgaR	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Sensing Class

External sensing using transported metabolites

Synonym(s):

DNA-binding transcriptional repressor AgaR, YhaW

Gene name(s):

agaR

Functional conformation(s):

AgaR

Coregulator(s):

AgaR, CRP

Summary:

TF Summary ...[more]

REGULATION EXERTED BY AgaR,CRP

Info M3D | Colombos

KNOWN BINDING SITES (The central relative position is relative to the promoter +1)
AgaR repressor CRP activator
Transcription Factor		Regulated		Binding Sites				Evidence	References
Functional conformation	Function	Promoter	Gene(s)	LeftPos	RigthPos	Central Rel-Pos	Sequence
CRP-cyclic-AMP	activator	kbaZp	kbaZ , agaV , agaW , agaA	3278795	3278816	-60.5	attatgtttcTTTTGTGAATCAGATCAGAAAAccattatctt	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
AgaR	repressor	kbaZp	kbaZ , agaV , agaW , agaA	3278781	3278800	-75.5	tttcagtgacTTTCATTATGTTTCTTTTGTgaatcagatc	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
AgaR	repressor	kbaZp	kbaZ , agaV , agaW , agaA	3278825	3278844	-31.5	aaccattatcTTTCGTTTTATTTTTATCTCaccatgacgc	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
AgaR	repressor	kbaZp	kbaZ , agaV , agaW , agaA	3278859	3278878	3.5	tgacgcagtaTCAACTGAAACAAAACGAAAgattaatatc	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]

Evidence:	[EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis
Reference(s):	[1] Ray WK., et al., 2004