RegulonDB RegulonDB 11.1: Regulon Form
   
   


AgaR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
AgaR Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class External sensing using transported metabolites
Synonym(s): DNA-binding transcriptional repressor AgaR, YhaW
Gene name(s): agaR
Functional conformation(s): AgaR
Coregulator(s): AgaR, CRP
Summary: TF Summary ...[more]

REGULATION EXERTED BY AgaR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
AgaR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
AgaR repressor agaRp agaR 3278713 3278732 -19.5 tgggcttgcaTTTGCTTAATAGAAAGGCGTtaataggcaa [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
AgaR repressor agaRp agaR 3278686 3278705 8.5 cgttaataggCAAAACGAAATGAAACGAAAgttttacgaa [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
AgaR repressor agaSp agaS , kbaY , agaB , agaC , agaD , agaI 3281605 3281624 -274.5 ctggattcagGGTCAATTAGCTTCGTTTTGatagtttgct [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
AgaR repressor agaSp agaS , kbaY , agaB , agaC , agaD , agaI 3281668 3281687 -211.5 ccgtaaggccTTTCTTTTTCTTTCGTTTTGatctgtgcag [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
AgaR repressor agaSp agaS , kbaY , agaB , agaC , agaD , agaI 3281785 3281804 -94.5 gcatccagcaATCCCTTTTGCTTCCTTTATcttttctttc [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
AgaR repressor agaSp agaS , kbaY , agaB , agaC , agaD , agaI 3281827 3281846 -52.5 cgatcacaaaTTTCGTTTTATTTCTTTTTTctccattgaa [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
AgaR repressor agaSp agaS , kbaY , agaB , agaC , agaD , agaI 3281858 3281877 -21.5 tccattgaacTTTCAGTTTCTTTTCTATAGattttaatca [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
AgaR repressor agaSp agaS , kbaY , agaB , agaC , agaD , agaI 3281901 3281920 22.5 aaagacatcaCCAAGTGAAATGAAACGAAAggcaagtgaa [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]

Evidence: [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis
Reference(s): [1] Ray WK., et al., 2004



Reference(s)    

 [1] Ray WK., Larson TJ., 2004, Application of AgaR repressor and dominant repressor variants for verification of a gene cluster involved in N-acetylgalactosamine metabolism in Escherichia coli K-12., Mol Microbiol 51(3):813-26

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