RegulonDB

TRANSCRIPTION FACTOR:

Name:

FNR	Weight Matrix Tractordb tool

Connectivity class

Global Regulator

Sensing Class

Using internal synthesized signals

Synonym(s):

DNA-binding transcriptional dual regulator FNR, NirA, NirR, OssA, OxrA

Gene name(s):

fnr

Functional conformation(s):

FNR , FNR-[4Fe-4S]²⁺ reduced , FNR-[2Fe-2S]²⁺ oxidized

Coregulator(s):

AcrR, AdiY, ArcA, ArgP, ArgR, BtsR, CRP, CadC, CaiF, Cbl, CdaR, Cra, CueR, CusR, CysB, DcuR, DksA, DksA-ppGpp, DnaA, DpiA, EvgA, ExuR, FNR, FhlA, Fis, FlhDC, Fur, GadE, GadE-RcsB, GadW, GadX, GcvA, GlpR, H-NS, HdfR, HprR, HyfR, HypT, IHF, LeuO, Lrp, MalT, MarA, MetR, MlrA, ModE, Nac, NagC, NarL, NarP, NfeR, NikR, NorR, NrdR, NsrR, NtrC, OmpR, OxyR, PdhR, PhoB, PhoP, PurR, PuuR, RcsB, Rob, RstA, RutR, SlyA, SoxR, SoxS, TdcA, TdcR, TorR, YeiL, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

CRP	Weight Matrix Tractordb tool

Connectivity class

Global Regulator

Sensing Class

Using internal synthesized signals

Synonym(s):

Cap, Csm, DNA-binding transcriptional dual regulator CRP, GurB

Gene name(s):

crp

Functional conformation(s):

CRP , CRP-cyclic-AMP

Coregulator(s):

AaeR, AcrR, AdiY, AgaR, AraC, ArcA, ArgP, ArgR, AscG, BasR, BolA, BtsR, CRP, CRP-Sxy, CaiF, ChbR, ComR, CpxR, Cra, CreB, CsgD, CspA, CsqR, CusR, CytR, DcuR, DeoR, DgoR, DksA-ppGpp, DnaA, DpiA, DsdC, EbgR, EnvY, EvgA, ExuR, FNR, FadR, FeaR, FhlA, Fis, FlhDC, FliZ, FrlR, FucR, Fur, GadE, GadE-RcsB, GadW, GadX, GalR, GalS, GatR, GcvA, GlaR, GlcC, GlpR, GlrR, GntR, GutM, H-NS, HU, HdfR, HipB, HprR, HyfR, HypT, IHF, IclR, IdnR, LacI, LeuO, LexA, LrhA, Lrp, LsrR, MalI, MalT, MarA, MarR, MatA, McbR, MelR, MetJ, MhpR, Mlc, MlrA, ModE, MprA, MqsA, MurR, Nac, NadR, NagC, NanR, NarL, NarP, NrdR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PhoB, PhoP, PlaR, PrpR, PurR, PuuR, QseB, RbsR, RcdA, RcsAB, RcsB, RcsB-BglJ, RhaR, RhaS, Rob, RspR, RstA, SdiA, SlyA, SoxR, SoxS, SrlR, StpA, TdcA, TdcR, TorR, TreR, UhpA, UidR, UlaR, UvrY, UxuR, XylR, YdeO, YjjQ, ZraR, ppGpp

Summary:

TF Summary ...[more]

TRANSCRIPTION FACTOR:

Info

Name:

NarL	Weight Matrix Tractordb tool

Connectivity class

Local Regulator

Sensing Class

External-Two-component systems

Synonym(s):

DNA-binding transcriptional dual regulator NarL, FrdR, NarR, nitrate/nitrite response regulator NarL

Gene name(s):

narL

Functional conformation(s):

NarL , NarL-phosphorylated

Coregulator(s):

AppY, ArcA, CRP, Cra, DcuR, DpiA, EvgA, FNR, FhlA, Fis, FlhDC, Fur, H-NS, IHF, IscR, Lrp, ModE, NagC, NarL, NarP, NikR, NorR, NsrR, OxyR, PhoP, RcsB, RstA, SoxS, TorR, UvrY, YdeO

Summary:

TF Summary ...[more]

REGULATION EXERTED BY CRP,FNR,NarL

Info M3D | Colombos

KNOWN BINDING SITES (The central relative position is relative to the promoter +1)
CRP activator FNR activator NarL repressor
Transcription Factor		Regulated		Binding Sites				Evidence	References
Functional conformation	Function	Promoter	Gene(s)	LeftPos	RigthPos	Central Rel-Pos	Sequence
CRP-cyclic-AMP	activator	dcuBp1	fumB , dcuB	4348860	4348881	-106.5	agccaatattCACTGTGAGGTATTTGCTAAAGccggtaacga	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
NarL-phosphorylated	repressor	dcuBp1	fumB , dcuB	4348738	4348744	24.0	gggttcacacATGTTATttactatcca	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
NarL-phosphorylated	repressor	dcuBp1	fumB , dcuB	4348719	4348725	43.0	actatccaacTTATCATaatactgata	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
NarL-phosphorylated	repressor	dcuBp1	fumB , dcuB	4348743	4348749	19.0	cgcgagggttCACACATgttatttact	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
NarL-phosphorylated	repressor	dcuBp1	fumB , dcuB	4348760	4348766	2.0	aatttaaataGGATTATcgcgagggtt	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
NarL-phosphorylated	repressor	dcuBp1	fumB , dcuB	4348806	4348812	-45.0	aaacagttcaTACAAAAcagaacgtga	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
NarL-phosphorylated	repressor	dcuBp1	fumB , dcuB	4348870	4348876	-109.0	atattcactgTGAGGTAtttgctaaag	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]
FNR	activator	dcuBp1	fumB , dcuB	4348803	4348816	-45.5	ctgaaaacagTTCATACAAAACAGaacgtgactg	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	[1]

Evidence:	[EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis
Reference(s):	[1] Golby P., et al., 1998