RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by H-NS

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
acrE acrEp 0.24
adeD adep 0.10
adiA adiAp 0.12
adiY adiYp (nd)
appY appYp 0.29
appYp2 (nd)
asr asrp (nd)
bglG bglGp (nd)
bglGp (nd)
bglGp2 (nd)
bglG bglGp (nd)
bglGp (nd)
bglGp2 (nd)
bolA bolAp1 0.07
bolAp2 0.05
cadB cadBp (nd)
cadC cadCp (nd)
caiF caiFp (nd)
caiT caiTp 0.07
chiA chiAp 0.33
csgD csgDp1 0.51
csgDp2 0.09
glaH csiDp (nd)
csiE csiEp (nd)
cspA cspAp1 0.14
cspAp2 (nd)
cspD cspDp 0.54
cydA cydAp1 0.50
cydAp2 0.17
cydAp3 0.06
cydAp4 0.17
cydAp5 0.04
cydA cydAp1 0.50
cydAp2 0.17
cydAp3 0.06
cydAp4 0.17
cydAp5 0.04
cydA cydAp1 0.50
cydAp2 0.17
cydAp3 0.06
cydAp4 0.17
cydAp5 0.04
cydA cydAp1 0.50
cydAp2 0.17
cydAp3 0.06
cydAp4 0.17
cydAp5 0.04
cysP cysPp (nd)
degP degPp (nd)
dps dpsp 0.03
evgA evgAp1 (nd)
evgAp2 0.27
evgA evgAp1 (nd)
evgAp2 0.27
fes fesp 0.65
fimA fimAp 0.31
fimB fimBp1 0.14
fimBp2 (nd)
fimBp3 (nd)
fimB fimBp1 0.14
fimBp2 (nd)
fimBp3 (nd)
fimE fimEp 0.50
flhD flhDp 0.37
flhDp2 (nd)
fliA fliAp1 (nd)
fliAp2 (nd)
fliC fliCp (nd)
gadA gadAp (nd)
gadE gadEp (nd)
gadEp1 (nd)
gadEp3 0.33
gadEp4 (nd)
gadW gadWp1 (nd)
gadWp2 (nd)
gadXp (nd)
gadX gadAp (nd)
gadXp (nd)
gadXp (nd)
gadX gadAp (nd)
gadXp (nd)
gadXp (nd)
galE galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp3 (nd)
galE galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp3 (nd)
galE galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp3 (nd)
galE galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp1 0.03
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp2 (nd)
galEp3 (nd)
garP garPp (nd)
hchA hchAp 0.17
hchAp2 (nd)
hchA hchAp 0.17
hchAp2 (nd)
hdeA hdeAp 0.33
hdeD hdeDp 0.30
hdfR hdfRp (nd)
hisJ argTp (nd)
hisJp 0.36
hlyE hlyEp (nd)
hns hnsp 0.57
ilvI ilvIHp1 0.10
ilvIp2 (nd)
ilvIp3 (nd)
ilvIp4 (nd)
lacZ lacZp1 0.13
lacZp2 (nd)
lacZp3 (nd)
lacZp4 (nd)
leuO leuOp 0.24
leuOp1 (nd)
leuOp2 (nd)
leuOp3 (nd)
leuO leuOp 0.24
leuOp1 (nd)
leuOp2 (nd)
leuOp3 (nd)
lrp lrpp 0.37
micF micFp (nd)
nhaA nhaAp1 0.29
nhaAp2 (nd)
nirB nirBp 0.01
nrdA nrdAp 0.32
nrdD nrdDp 0.36
osmC osmCp1 0.11
osmCp2 (nd)
osmC osmCp1 0.11
osmCp2 (nd)
proV proVp1 0.05
proVp2 0.27
proVp3 0.24
proV proVp1 0.05
proVp2 0.27
proVp3 0.24
rcsA rcsAp 0.36
rcsD rcsDp 0.21
relA relAp1 0.18
relAp2 0.02
relAp3 (nd)
relAp4 (nd)
rrsB rrsBp1 (nd)
rrsBp2 (nd)
rrsC rrsCp1 (nd)
rrsCp2 (nd)
rrsD rrsDp1 (nd)
rrsDp2 (nd)
rrsG rrsGp1 (nd)
rrsGp2 (nd)
rrsH rrsHp1 (nd)
rrsHp2 (nd)
slp slpp 0.22
cmoM cmoMp 0.19
srlA srlAp 0.21
ssrS ssrSp1 (nd)
ssrSp1 (nd)
ssrSp2 (nd)
ssrSp2 (nd)
ssrS ssrSp1 (nd)
ssrSp1 (nd)
ssrSp2 (nd)
ssrSp2 (nd)
ssrS ssrSp1 (nd)
ssrSp1 (nd)
ssrSp2 (nd)
ssrSp2 (nd)
ssrS ssrSp1 (nd)
ssrSp1 (nd)
ssrSp2 (nd)
ssrSp2 (nd)
stpA stpAp1 0.11
stpAp2 (nd)
stpAp3 (nd)
yciG yciGp (nd)
yciGp (nd)
yciG yciGp (nd)
yciGp (nd)
ydeO safAp (nd)
ydeOp (nd)
ydeP ydePp 0.04
yhiM yhiMp (nd)
yjjP yjjPp (nd)
yjjQ yjjQp 0.10
mdtJ mdtJp (nd)
ftnA ftnAp 0.29
casA casAp 0.29
gspC gspCp1 (nd)
gspCp2 0.07
gspCp3 0.14
gspC gspCp1 (nd)
gspCp2 0.07
gspCp3 0.14
gspA gspAp1 0.12
gspAp2 0.12
gspAp3 (nd)
gspAp4 (nd)
gspA gspAp1 0.12
gspAp2 0.12
gspAp3 (nd)
gspAp4 (nd)



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