RegulonDB RegulonDB 10.10:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 106 gene(s)


  Gene name Product Operon Gene regulation GOs list
  adhE aldehyde-alcohol dehydrogenase adhE Cra , FNR , Fis , Lrp , NarL view
  aidB isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor aidB Ada , AidB , Lrp view
  alaA glutamate-pyruvate aminotransferase alaA-yfbR Lrp view
  alaE L-alanine exporter alaE nd view
  alaT tRNAalaT rrsA-ileT-alaT-rrlA-rrfA Fis , Lrp nd
  alaU tRNAalaU rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp nd
  alaV tRNAalaV rrsH-ileV-alaV-rrlH-rrfH Fis , Lrp nd
  argO L-arginine exporter argO ArgP , Lrp view
  aroA 3-phosphoshikimate-1-carboxyvinyltransferase serC-aroA CRP , Lrp view
  avtA valine-pyruvate aminotransferase avtA Lrp view
  cadA lysine decarboxylase 1 cadBA ArcA , CadC , GadX , Lrp view
  cadB lysine:cadaverine antiporter cadBA ArcA , CadC , GadX , Lrp view
  dadA D-amino acid dehydrogenase dadAX CRP , Lrp view
  dadX alanine racemase 2, PLP-binding dadAX CRP , Lrp view
  fau 5-formyltetrahydrofolate cyclo-ligase ssrS-fau Fis , Lrp , StpA view
  fimA major type 1 subunit fimbrin (pilin) fimAICDFGH IHF , Lrp view
  fimC periplasmic chaperone, required for type 1 fimbriae fimAICDFGH IHF , Lrp view
  fimD outer membrane protein; export and assembly of type 1 fimbriae fimAICDFGH IHF , Lrp view
  fimE regulator for fimA fimE LrhA , Lrp view
  fimF fimbrial morphology fimAICDFGH IHF , Lrp view
  fimG fimbrial morphology fimAICDFGH IHF , Lrp view
  fimH minor fimbrial subunit, D-mannose specific adhesin fimAICDFGH IHF , Lrp view
  fimI fimbrial protein fimAICDFGH IHF , Lrp view
  gabD succinate-semialdehyde dehydrogenase (NADP+) csiD-lhgO-gabDTP CRP , CsiR , Lrp , Nac view
  gabP 4-aminobutyrate:H+ symporter csiD-lhgO-gabDTP CRP , CsiR , Lrp , Nac view
  gabT 4-aminobutyrate aminotransferase csiD-lhgO-gabDTP CRP , CsiR , Lrp , Nac view
  gcvH glycine cleavage system H protein gcvTHP CRP , FNR , GcvA , Lrp , PurR view
  gcvP glycine decarboxylase gcvTHP CRP , FNR , GcvA , Lrp , PurR view
  gcvT aminomethyltransferase gcvTHP CRP , FNR , GcvA , Lrp , PurR view
  csiD putative protein csiD-lhgO-gabDTP CRP , CsiR , Lrp view
  gltB glutamate synthase, large subunit gltBDF AdiY , ArgR , CRP , FNR , Fur , GadE , HdfR , IHF , Lrp , Nac view
  gltD glutamate synthase, small subunit gltBDF AdiY , ArgR , CRP , FNR , Fur , GadE , HdfR , IHF , Lrp , Nac view
  gltF periplasmic protein gltBDF AdiY , ArgR , CRP , FNR , Fur , GadE , HdfR , IHF , Lrp , Nac view
  gltT tRNAgltT rrsB-gltT-rrlB-rrfB Fis , Lrp nd
  gltU tRNAgltU rrsC-gltU-rrlC-rrfC Fis , Lrp nd
  gltV tRNAgltV rrsE-gltV-rrlE-rrfE Fis , Lrp nd
  gltW tRNAgltW rrsG-gltW-rrlG-rrfG Fis , Lrp nd
  hdeA HdeA monomer, chaperone active form hdeAB-yhiD FliZ , GadE , GadW , GadX , Lrp , MarA , PhoP , RcsB , TorR view
  hdeB HdeB monomer hdeAB-yhiD FliZ , GadE , GadW , GadX , Lrp , MarA , PhoP , RcsB , TorR view
  ileT tRNAileT rrsA-ileT-alaT-rrlA-rrfA Fis , Lrp nd
  ileU tRNAileU rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp nd
  ileV tRNAileV rrsH-ileV-alaV-rrlH-rrfH Fis , Lrp nd
  ilvA threonine deaminase ilvLXG_1G_2MEDA IHF , Lrp view
  ilvD dihydroxy acid dehydratase ilvLXG_1G_2MEDA IHF , Lrp view
  ilvE branched-chain amino-acid aminotransferase ilvLXG_1G_2MEDA IHF , Lrp view
  ilvG_1 acetolactate synthase II, large subunit, N-ter fragment (pseudogene) ilvLXG_1G_2MEDA IHF , Lrp view
  ilvH acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit ilvIH Lrp view
  ilvI acetolactate synthase / acetohydroxybutanoate synthase, catalytic subunit ilvIH Lrp view
  ilvL ilvGEDA operon leader peptide ilvLXG_1G_2MEDA IHF , Lrp view
  ilvM acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit ilvLXG_1G_2MEDA IHF , Lrp view
  ilvX small protein ilvLXG_1G_2MEDA IHF , Lrp nd
  kbl 2-amino-3-ketobutyrate CoA ligase kbl-tdh Lrp view
  leuE leucine exporter leuE Lrp view
  lhgO L-2-hydroxyglutarate oxidase csiD-lhgO-gabDTP CRP , CsiR , Lrp view
  livF branched chain amino acid / phenylalanine ABC transporter - ATP binding subunit livKHMGF Lrp view
  livG branched chain amino acid / phenylalanine ABC transporter - ATP binding subunit livKHMGF Lrp view
  livH branched chain amino acid / phenylalanine ABC transporter - membrane subunit livKHMGF Lrp view
  livJ branched chain amino acid / phenylalanine ABC transporter - periplasmic binding protein livJ Lrp view
  livK L-leucine / L-phenylalanine ABC transporter - periplasmic binding protein livKHMGF Lrp view
  livM branched chain amino acid / phenylalanine ABC transporter - membrane subunit livKHMGF Lrp view
  lrp Lrp transcriptional dual regulator lrp GadE , Lrp , NsrR view
  lysP lysine:H+ symporter lysP ArgP , Lrp view
  lysU lysine-tRNA ligase / Ap4A synthetase / Ap3A synthetase lysU Lrp view
  malT MalT transcriptional activator malT CRP , Lrp , Mlc view
  micF MicF micF AcrR , HU , IHF , Lrp , MarA , OmpR , Rob , SoxS view
  ompC outer membrane protein C ompC CpxR , EnvY , IHF , Lrp , OmpR , YjjQ view
  oppA peptide ABC transporter - periplasmic binding protein oppABCDF ArcA , Fur , Lrp , ModE view
  oppB murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit oppABCDF ArcA , Fur , Lrp , ModE view
  oppC murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit oppABCDF ArcA , Fur , Lrp , ModE view
  oppD murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit oppABCDF ArcA , Fur , Lrp , ModE view
  oppF murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit oppABCDF ArcA , Fur , Lrp , ModE view
  osmC osmotically inducible peroxiredoxin osmC Lrp , NhaR , RcsB view
  osmY periplasmic chaperone, osmotically induced osmY CRP , Fis , FliZ , IHF , Lrp view
  ridA enamine/imine deaminase, redox regulated chaperone ridA nd view
  rrfA 5S ribosomal RNA (rrfA) rrsA-ileT-alaT-rrlA-rrfA Fis , Lrp nd
  rrfB rrfB 5S ribosomal RNA rrsB-gltT-rrlB-rrfB Fis , Lrp view
  rrfC rrfC 5S ribosomal RNA rrsC-gltU-rrlC-rrfC Fis , Lrp view
  rrfD rrfD 5S ribosomal RNA rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp view
  rrfE rrfE 5S ribosomal RNA rrsE-gltV-rrlE-rrfE Fis , Lrp view
  rrfF rrfF 5S ribosomal RNA rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp view
  rrfG rrfG 5S ribosomal RNA rrsG-gltW-rrlG-rrfG Fis , Lrp view
  rrfH rrfH 5S ribosomal RNA rrsH-ileV-alaV-rrlH-rrfH Fis , Lrp view
  rrlA 23S ribosomal RNA (rrlA) rrsA-ileT-alaT-rrlA-rrfA Fis , Lrp nd
  rrlB rrlB 23S ribosomal RNA rrsB-gltT-rrlB-rrfB Fis , Lrp view
  rrlC rrlC 23S ribosomal RNA rrsC-gltU-rrlC-rrfC Fis , Lrp view
  rrlD rrlD 23S ribosomal RNA rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp view
  rrlE rrlE 23S ribosomal RNA rrsE-gltV-rrlE-rrfE Fis , Lrp view
  rrlG rrlG 23S ribosomal RNA rrsG-gltW-rrlG-rrfG Fis , Lrp view
  rrlH rrlH 23S ribosomal RNA rrsH-ileV-alaV-rrlH-rrfH Fis , Lrp view
  rrsA 16S ribosomal RNA (rrsA) rrsA-ileT-alaT-rrlA-rrfA Fis , Lrp nd
  rrsB rrsB 16S ribosomal RNA rrsB-gltT-rrlB-rrfB Fis , Lrp view
  rrsC rrsC 16S ribosomal RNA rrsC-gltU-rrlC-rrfC Fis , Lrp view
  rrsD rrsD 16S ribosomal RNA rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp view
  rrsE rrsE 16S ribosomal RNA rrsE-gltV-rrlE-rrfE Fis , Lrp view
  rrsG rrsG 16S ribosomal RNA rrsG-gltW-rrlG-rrfG Fis , Lrp view
  rrsH rrsH 16S ribosomal RNA rrsH-ileV-alaV-rrlH-rrfH Fis , Lrp view
  sdaA L-serine deaminase I sdaA Lrp view
  serA serA CRP , Lrp , Nac view
  serC serC-aroA CRP , Lrp view
  ssrS 6S RNA ssrS-fau Fis , Lrp , StpA nd
  stpA H-NS-like DNA-binding transcriptional repressor with RNA chaperone activity stpA Lrp , StpA view
  tdh threonine dehydrogenase kbl-tdh Lrp view
  thrV tRNAthrV rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp nd
  yeiL YeiL DNA-binding transcriptional activator yeiL FNR , IHF , Lrp , YeiL view
  yhiD inner membrane protein YhiD hdeAB-yhiD FliZ , GadE , GadW , GadX , Lrp , MarA , PhoP , RcsB , TorR view
  yojI microcin J25 efflux protein, putative ABC superfamily: membrane component / ATP-binding component yojI Lrp view
RegulonDB