RegulonDB RegulonDB 10.6.3:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 194 gene(s)


  Gene name Product Operon Gene regulation GOs list
  acrE AcrEF-TolC multidrug efflux pump - membrane fusion protein acrEF FNR view
  acrF AcrEF-TolC multidrug efflux pump - permease subunit acrEF FNR view
  adeD cryptic adenine deaminase adeD nd view
  adiA arginine decarboxylase, degradative adiA AdiY , IHF view
  adiY AdiY DNA-binding transcriptional activator adiY nd view
  alaU tRNAalaU rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp nd
  alaV tRNAalaV rrsH-ileV-alaV-rrlH-rrfH Fis , Lrp nd
  appY AppY DNA-binding transcriptional activator appY DpiA view
  asr acid shock protein asr PhoB , RcdA , RstA view
  bglB 6-phospho-β-glucosidase B; cryptic bglGFB CRP , Fis , LeuO , StpA view
  bglF BglF bglGFB CRP , Fis , LeuO , StpA view
  bglG BglG transcriptional antiterminator bglGFB CRP , Fis , LeuO , StpA view
  bglJ BglJ DNA-binding transcriptional regulator yjjQ-bglJ LeuO view
  bolA BolA DNA-binding transcriptional dual regulator bolA OmpR view
  cadA lysine decarboxylase 1 cadBA ArcA , CadC , GadX , Lrp view
  cadB lysine:cadaverine antiporter cadBA ArcA , CadC , GadX , Lrp view
  cadC CadC DNA-binding transcriptional activator cadC CadC , FNR , LeuO , MlrA view
  caiA crotonobetainyl-CoA reductase caiTABCDE ArcA , CRP , CaiF , FNR view
  caiB γ-butyrobetainyl-CoA:carnitine CoA transferase caiTABCDE ArcA , CRP , CaiF , FNR view
  caiC carnitine-CoA ligase caiTABCDE ArcA , CRP , CaiF , FNR view
  caiD crotonobetainyl-CoA hydratase caiTABCDE ArcA , CRP , CaiF , FNR view
  caiE predicted acyl transferase caiTABCDE ArcA , CRP , CaiF , FNR view
  caiF CaiF transcriptional activator caiF CRP , FNR , NarL view
  caiT L-carnitine : γ-butyrobetaine antiporter caiTABCDE ArcA , CRP , CaiF , FNR view
  cas1 multifunctional nuclease Cas1 casABCDE12 CRP , LeuO view
  cas2 Cas2 protein casABCDE12 CRP , LeuO view
  casA Cascade subunit A casABCDE12 CRP , LeuO view
  casB Cascade subunit B casABCDE12 CRP , LeuO view
  casC Cascade subunit C casABCDE12 CRP , LeuO view
  casD Cascade subunit D casABCDE12 CRP , LeuO view
  casE crRNA endonuclease casABCDE12 CRP , LeuO view
  chiA endochitinase chiA nd view
  cmoM tRNA cmo5U34 methyltransferase cmoM-mukFEB nd view
  csgD CsgD DNA-binding transcriptional dual regulator csgDEFG BasR , CRP , CpxR , Cra , CsgD , FliZ , IHF , MlrA , MqsA , OmpR , RcdA , RcsAB , RstA view
  csgE curli transport specificity factor csgDEFG BasR , CRP , CpxR , Cra , CsgD , FliZ , IHF , MlrA , MqsA , OmpR , RcdA , RcsAB , RstA view
  csgF curli assembly component csgDEFG BasR , CRP , CpxR , Cra , CsgD , FliZ , IHF , MlrA , MqsA , OmpR , RcdA , RcsAB , RstA view
  csgG curli secretion channel csgDEFG BasR , CRP , CpxR , Cra , CsgD , FliZ , IHF , MlrA , MqsA , OmpR , RcdA , RcsAB , RstA view
  csiE stationary phase inducible protein csiE CRP view
  cspA CspA DNA-binding transcriptional activator cspA Fis view
  cspD DNA replication inhibitor cspD CRP , MqsA view
  cydA cytochrome bd-I terminal oxidase subunit I cydAB ArcA , Cra , FNR , HypT view
  cydB cytochrome bd-I terminal oxidase subunit II cydAB ArcA , Cra , FNR , HypT view
  cysA sulfate / thiosulfate ABC transporter - ATP binding subunit cysPUWAM CysB view
  cysG siroheme synthase subunit nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  cysM cysteine synthase B cysPUWAM CysB view
  cysP sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP cysPUWAM CysB view
  cysU sulfate / thiosulfate ABC transporter - membrane subunit cysPUWAM CysB view
  cysW sulfate / thiosulfate ABC transporter - membrane subunit cysPUWAM CysB view
  dctR predicted DNA-binding transcriptional regulator slp-dctR GadW , GadX , MarA , YdeO view
  degP serine protease Do degP CpxR view
  dps stationary phase nucleoid protein that sequesters iron and protects DNA from damage dps Fis , IHF , MntR , OxyR view
  entF apo-serine activating enzyme fes-ybdZ-entF-fepE FNR , Fur view
  evgA EvgA transcriptional activator evgAS EvgA view
  evgS EvgS sensory histidine kinase evgAS EvgA view
  fau 5-formyltetrahydrofolate cyclo-ligase ssrS-fau Fis , Lrp , StpA view
  fepE ferric enterobactin (enterochelin) transport fes-ybdZ-entF-fepE FNR , Fur view
  fes enterochelin esterase fes-ybdZ-entF-fepE FNR , Fur view
  fimA major type 1 subunit fimbrin (pilin) fimAICDFGH IHF , Lrp view
  fimB regulator for fimA fimB BasR , IHF , NagC , NanR view
  fimC periplasmic chaperone, required for type 1 fimbriae fimAICDFGH IHF , Lrp view
  fimD outer membrane protein; export and assembly of type 1 fimbriae fimAICDFGH IHF , Lrp view
  fimE regulator for fimA fimE LrhA , Lrp view
  fimF fimbrial morphology fimAICDFGH IHF , Lrp view
  fimG fimbrial morphology fimAICDFGH IHF , Lrp view
  fimH minor fimbrial subunit, D-mannose specific adhesin fimAICDFGH IHF , Lrp view
  fimI fimbrial protein fimAICDFGH IHF , Lrp view
  flhC FlhC transcriptional dual regulator flhDC AcrR , CRP , FliZ , Fur , HdfR , IHF , LrhA , MatA , OmpR , QseB , RcsAB , YjjQ view
  flhD FlhD transcriptional dual regulator flhDC AcrR , CRP , FliZ , Fur , HdfR , IHF , LrhA , MatA , OmpR , QseB , RcsAB , YjjQ view
  fliA RNA polymerase, sigma 28 (sigma F) factor fliAZ-tcyJ CsgD , FlhDC , MatA , NsrR , SutR view
  fliC flagellar biosynthesis; flagellin, filament structural protein fliC GadE , MatA view
  fliZ FliZ DNA-binding transcriptional regulator fliAZ-tcyJ CsgD , FlhDC , MatA , NsrR , SutR view
  ftnA ferritin iron storage protein ftnA Fur view
  gabD succinate-semialdehyde dehydrogenase (NADP+) csiD-lhgO-gabDTP CRP , CsiR , Lrp , Nac view
  gabP 4-aminobutyrate:H+ symporter csiD-lhgO-gabDTP CRP , CsiR , Lrp , Nac view
  gabT 4-aminobutyrate aminotransferase csiD-lhgO-gabDTP CRP , CsiR , Lrp , Nac view
  gadA glutamate decarboxylase A subunit gadAXW AdiY , ArcA , CRP , FNR , Fis , GadW , GadX , RcsB , TorR view
  gadE GadE DNA-binding transcriptional activator gadEF-mdtEF ArcA , CRP , EvgA , FliZ , GadE , GadW , GadX , PhoP , YdeO view
  gadF small regulatory RNA GadF gadEF-mdtEF ArcA , CRP , EvgA , FliZ , GadE , GadW , GadX , PhoP , YdeO nd
  gadW GadW DNA-binding transcriptional dual regulator gadAXW FNR , GadE , GadW , GadX , PhoB , PhoP , RutR , SdiA , YdeO view
  gadX GadX DNA-binding transcriptional dual regulator gadAXW AdiY , ArcA , CRP , FNR , Fis , GadE , GadW , GadX , PhoB , RcsB , RutR , TorR view
  galE UDP-glucose 4-epimerase galETKM CRP , GalR , GalS , HU view
  galK galactokinase galETKM CRP , GalR , GalS , HU view
  galM galactose-1-epimerase galETKM CRP , GalR , GalS , HU view
  galT galactose-1-phosphate uridylyltransferase galETKM CRP , GalR , GalS , HU view
  garK glycerate kinase I garPLRK-rnpB CdaR , FNR , Fur view
  garL α-dehydro-β-deoxy-D-glucarate aldolase garPLRK-rnpB CdaR , FNR , Fur view
  garP galactarate / glucarate / glycerate transporter GarP garPLRK-rnpB CdaR , FNR , Fur view
  garR tartronate semialdehyde reductase garPLRK-rnpB CdaR , FNR , Fur view
  csiD putative protein csiD-lhgO-gabDTP CRP , CsiR , Lrp view
  gltT tRNAgltT rrsB-gltT-rrlB-rrfB Fis , Lrp nd
  gltU tRNAgltU rrsC-gltU-rrlC-rrfC Fis , Lrp nd
  gltW tRNAgltW rrsG-gltW-rrlG-rrfG Fis , Lrp nd
  gspA general secretory pathway component, cryptic gspAB nd view
  gspB calcium-binding protein required for initiation of chromosome replication gspAB nd view
  gspC putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspD putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspE putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspF putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspG putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspH putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspI putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspJ putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspK putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspL putative protein secretion protein for export gspCDEFGHIJKLMO Fur view
  gspM putative protein secretion protein gspCDEFGHIJKLMO Fur view
  gspO leader peptidase, integral membrane protein gspCDEFGHIJKLMO Fur view
  gutM GutM DNA-binding transcriptional activator srlAEBD-gutM-srlR-gutQ CRP , GutM , GutR view
  gutQ D-arabinose 5-phosphate isomerase srlAEBD-gutM-srlR-gutQ CRP , GutM , GutR view
  hchA amino acid deglycase Hsp31 hchA nd view
  hdeA HdeA monomer, chaperone active form hdeAB-yhiD FliZ , GadE , GadW , GadX , Lrp , MarA , PhoP , RcsB , TorR view
  hdeB HdeB monomer hdeAB-yhiD FliZ , GadE , GadW , GadX , Lrp , MarA , PhoP , RcsB , TorR view
  hdeD acid-resistance membrane protein hdeD GadE , GadX , PhoP , RcsB view
  hdfR HdfR DNA-binding transcriptional dual regulator hdfR nd view
  hisJ histidine ABC transporter - periplasmic binding protein argT-hisJQMP ArgR , NtrC view
  hisM lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit argT-hisJQMP ArgR , NtrC view
  hisP lysine/arginine/ornithine ABC transporter / histidine ABC transporter - ATP binding subunit argT-hisJQMP ArgR , NtrC view
  hisQ lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit argT-hisJQMP ArgR , NtrC view
  hlyE hemolysin E hlyE CRP , FNR , Fis , SlyA view
  hns H-NS DNA-binding transcriptional dual regulator hns CspA , Fis , GadX view
  ileU tRNAileU rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Fis , Lrp nd
  ileV tRNAileV rrsH-ileV-alaV-rrlH-rrfH Fis , Lrp nd
  ilvH acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit ilvIH Lrp view
  ilvI acetolactate synthase / acetohydroxybutanoate synthase, catalytic subunit ilvIH Lrp view
  lacA galactoside O-acetyltransferase lacZYA CRP , LacI view
  lacY lactose / melibiose:H+ symporter LacY lacZYA CRP , LacI