RegulonDB RegulonDB 10.8:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 51 gene(s)


  Gene name Product Operon Gene regulation GOs list
  ccmA ABC complex for formation and release of holoCcmE - ATP binding subunit napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmB ABC complex for formation and release of holoCcmE - membrane subunit CcmB napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmC ABC complex for formation and release of holoCcmE - membrane subunit CcmC napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmD ABC complex for formation and release of holoCcmE - membrane subunit CcmD napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmE membrane anchored periplasmic heme chaperone CcmE napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmF holocytochrome c synthetase - CcmF subunit napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmG holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmH holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  cysG siroheme synthase subunit nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  fdhF formate dehydrogenase H fdhF FNR , FhlA , NarL , NarP view
  fdnG formate dehydrogenase N, α subunit fdnGHI FNR , NarL , NarP view
  fdnH formate dehydrogenase N, β subunit fdnGHI FNR , NarL , NarP view
  fdnI formate dehydrogenase N, γ subunit fdnGHI FNR , NarL , NarP view
  hcp nitric oxide reductase hcp-hcr FNR , NarL , NarP , NsrR , OxyR view
  hcr NADH oxidoreductase hcp-hcr FNR , NarL , NarP , NsrR , OxyR view
  hyaA hydrogenase 1, small subunit hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaB hydrogenase 1, large subunit hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaC hydrogenase 1, b-type cytochrome subunit hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaD protein involved in processing of HyaA and HyaB proteins hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaE protein involved in quality control of HyaA hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaF protein involved in nickel incorporation into hydrogenase 1 proteins hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  napA large subunit of periplasmic nitrate reductase, molybdoprotein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napB subunit of periplasmic nitrate reductase, cytochrome c550 protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napC periplasmic nitrate reductase, cytochrome c protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napD signal peptide-binding chaperone for NapA napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napF ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napG ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napH ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  nirB nitrite reductase, large subunit nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  nirC nitrite transporter NirC nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  nirD nitrite reductase, small subunit nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  norV flavorubredoxin norVW FNR , IHF , NarL , NarP , NorR view
  norW NADH:flavorubredoxin reductase norVW FNR , IHF , NarL , NarP , NorR view
  nrfA formate-dependent nitrite reductase - NrfA subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfB formate-dependent nitrite reductase - penta-heme cytochrome c nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfC formate-dependent nitrite reductase, 4Fe-4S subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfD formate-dependent nitrite reductase - NrfD subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfE formate-dependent nitrite reductase; possible assembly function nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfF activator of formate-dependent nitrite reductase complex nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfG NrfG nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  poxB pyruvate oxidase poxB-ltaE-ybjT Cra , MarA , SoxS view
  ydeP acid resistance protein ydeP EvgA , NagC , NarL , NarP , PhoP , RcsB , UvrY view
  ydhT conserved protein ydhYVWXUT FNR , NarL , NarP nd
  ydhU predicted cytochrome ydhYVWXUT FNR , NarL , NarP view
  ydhV predicted oxidoreductase ydhYVWXUT FNR , NarL , NarP view
  ydhW putative protein ydhYVWXUT FNR , NarL , NarP nd
  ydhX predicted 4Fe-4S ferredoxin-type protein ydhYVWXUT FNR , NarL , NarP view
  ydhY predicted 4Fe-4S ferredoxin-type protein ydhYVWXUT FNR , NarL , NarP view
  yeaR conserved protein yeaR-yoaG Fis , NarL , NarP , NsrR view
  yoaG putative protein yeaR-yoaG Fis , NarL , NarP , NsrR nd
  ytfE iron-sulfur cluster repair protein YtfE ytfE FNR , NarL , NarP , NsrR view
RegulonDB